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Pull requests: nf-core/tools

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Pull requests list

Use components.json instead of github repo as modules version cache
#4396 opened Jul 16, 2026 by mashehu Contributor • Draft
1
Do not run test with NXF_VER latest-everything on releases
#4393 opened Jul 14, 2026 by maxulysse Member Loading…
4 tasks
3
fix: preserve string types in schema builder
#4392 opened Jul 12, 2026 by sapunyangkut Loading…
3 tasks done
Fix false nf-test failure on empty stderr
#4391 opened Jul 12, 2026 by sapunyangkut Loading…
3 tasks done
Add TODO for module tags without metadata
#4390 opened Jul 12, 2026 by sapunyangkut Loading…
1 of 2 tasks
1
Update actions/checkout action to v7
#4388 opened Jul 9, 2026 by renovate Bot Loading…
1 task
4
make CLI startup faster
#4383 opened Jul 7, 2026 by mashehu Contributor Loading…
3
Migrate pipeline lint rules to AST-grep
#4381 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Flag legacy versions emits
#4380 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Flag legacy versions.yml topic outputs
#4379 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Add AST-grep lint foundations
#4377 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Modules: add gpu container creation
#4375 opened Jul 6, 2026 by mashehu Contributor • Draft
1
add section about human-to-human communication to AI pollicy
#4371 opened Jul 3, 2026 by mashehu Contributor Loading…
4
Update mcr.microsoft.com/devcontainers/base Docker tag to v2.1.11
#4363 opened Jul 1, 2026 by renovate Bot Loading…
1 task
1
build seqera containers on modules create and modules bump-version
#4362 opened Jun 30, 2026 by mashehu Contributor • Draft
2
Emphasise base.config values SHOULD be adjusted on a per-pipeline basis by developer
#4360 opened Jun 30, 2026 by jfy133 Member Loading…
4 tasks
3
Update pre-commit hooks
#4359 opened Jun 29, 2026 by renovate Bot Loading…
1 task
3
Log subworkflow dependencies on install (#3871)
#4357 opened Jun 28, 2026 by xorrito624 Loading…
7
Update dependency pytest to v9 [SECURITY] security
#4356 opened Jun 27, 2026 by renovate Bot Loading…
1 task
1
Enable Slack notifications on pipeline start for megatests
#4349 opened Jun 25, 2026 by maxulysse Member Loading…
4 tasks
4
switch to more secure split PR comment approach
#4342 opened Jun 23, 2026 by mashehu Contributor Loading…
3
test: cover val substring in emit names
#4340 opened Jun 22, 2026 by joeydufourd Loading…
2 of 4 tasks
4
Bump msgpack from 1.1.2 to 1.2.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4339 opened Jun 19, 2026 by dependabot Bot Loading…
1
Bump aiohttp from 3.13.5 to 3.14.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4330 opened Jun 17, 2026 by dependabot Bot Loading…
1
Bump cryptography from 47.0.0 to 48.0.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4329 opened Jun 17, 2026 by dependabot Bot Loading…
1
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