tests

test.yml

122 workflow runs

Replace figurative verbs and idioms in docstrings, comments and docs
completed successfully:
tests#122:Pull request#90synchronizebyedkerk
docs/figurative-phrases
Nov 6, 202622m 21s
Replace figurative verbs and idioms in docstrings, comments and docs
cancelled:
tests#121:Pull request#90openedbyedkerk
docs/figurative-phrases
Nov 6, 20265m 16s
Define geckopy.__version__
completed successfully:
tests#120:Pull request#89openedbyedkerk
feat/version
Nov 6, 20267m 11s
Require cma
completed successfully:
tests#119:Pull request#88synchronizebyedkerk
fix/require-cma
Nov 6, 20263m 25s
Require cma
completed successfully:
tests#118:Pull request#88openedbyedkerk
fix/require-cma
Nov 6, 20266m 48s
Measured zero concentrations and isozyme coverage of the proteomics
completed successfully:
tests#117:Pull request#86openedbyedkerk
feat/measured-zeros-isozyme-coverage
Nov 3, 20263m 15s
enzyme_usage: demand ratio of the usage over the measured concentrations
completed successfully:
tests#116:Pull request#85openedbyedkerk
feat/usage-demand-ratio
Nov 3, 20263m 8s
Merge main into develop after 4.0.0b2
completed successfully:
tests#115:Pull request#84openedbyedkerk
sync/main-to-develop-4.0.0b2
Nov 2, 20262m 45s
Merge pull request #83 from CompMetEng/merge/main-into-release
completed successfully:
tests#114:Commitd2347c9pushedbyedkerk
main
Nov 2, 20262m 59s
geckopy 4.0.0b2
completed successfully:
tests#113:Pull request#83synchronizebyedkerk
merge/main-into-release
Nov 2, 20262m 59s
geckopy 4.0.0b2
completed successfully:
tests#112:Pull request#83openedbyedkerk
merge/main-into-release
Nov 2, 20262m 56s
Release 4.0.0b2
completed successfully:
tests#111:Pull request#82openedbyedkerk
release/4.0.0b2
Nov 2, 20263m 10s
fix: fraction_of_optimum of pfba_enzymes for a negative or minimised objective
completed successfully:
tests#110:Pull request#81openedbyedkerk
fix/pfba-negative-objective
Nov 2, 20263m 21s
README: shorter, with the GECKO logo and the protocol citation
completed successfully:
tests#109:Pull request#79synchronizebyedkerk
docs/readme-logo
Nov 1, 20262m 58s
README: shorter, with the GECKO logo and the protocol citation
completed successfully:
tests#108:Pull request#79openedbyedkerk
docs/readme-logo
Nov 1, 20262m 47s
Edge cases of geckopy agree with GECKO
completed successfully:
tests#107:Pull request#78openedbyedkerk
fix/parity-round-5
Nov 1, 20262m 40s
get_enzyme_bottlenecks ranks by the re-solved change of the objective
completed successfully:
tests#106:Pull request#77synchronizebyedkerk
feat/bottlenecks-objective-gain
Oct 31, 20263m 1s
get_enzyme_bottlenecks ranks by the re-solved change of the objective
completed successfully:
tests#105:Pull request#77openedbyedkerk
feat/bottlenecks-objective-gain
Oct 31, 20263m 2s
get_conc_control_coeffs takes the finite-difference coefficients by default
completed successfully:
tests#104:Pull request#76openedbyedkerk
fix/conc-control-coeffs-finite-difference
Oct 31, 20262m 11s
Return the infeasible solution from every solve instead of raising
completed successfully:
tests#103:Pull request#75openedbyedkerk
fix/flaky-gurobi-infeasible-start
Oct 31, 20263m 5s
KEGG database, solver tolerance and zero-total f factor as in GECKO
completed successfully:
tests#102:Pull request#74openedbyedkerk
fix/parity-round-4
Oct 30, 20263m 10s
Remove the references to the retired Bayesian kcat tuning (#73)
completed successfully:
tests#101:Commitb548955pushedbyedkerk
main
Oct 30, 20262m 49s
Remove the references to the retired Bayesian kcat tuning
completed successfully:
tests#100:Pull request#73openedbyedkerk
chore/remove-bayesian-traces
Oct 30, 20262m 48s
Same results as GECKO for subsets, subsystems, uniprot cells, FSEOF and pFBA; scipy solver support
completed successfully:
tests#99:Pull request#72synchronizebyedkerk
fix/parity-round-3
Oct 30, 20263m 20s
Same results as GECKO for subsets, subsystems, uniprot cells, FSEOF and pFBA; scipy solver support
failed:
tests#98:Pull request#72openedbyedkerk
fix/parity-round-3
Oct 30, 20262m 57s

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tests

122 workflow runs

Replace figurative verbs and idioms in docstrings, comments and docs

Replace figurative verbs and idioms in docstrings, comments and docs

Define geckopy.version

Require cma

Require cma

Measured zero concentrations and isozyme coverage of the proteomics

enzyme_usage: demand ratio of the usage over the measured concentrations

Merge main into develop after 4.0.0b2

Merge pull request #83 from CompMetEng/merge/main-into-release

geckopy 4.0.0b2

geckopy 4.0.0b2

Release 4.0.0b2

fix: fraction_of_optimum of pfba_enzymes for a negative or minimised objective

README: shorter, with the GECKO logo and the protocol citation

README: shorter, with the GECKO logo and the protocol citation

Edge cases of geckopy agree with GECKO

get_enzyme_bottlenecks ranks by the re-solved change of the objective

get_enzyme_bottlenecks ranks by the re-solved change of the objective

get_conc_control_coeffs takes the finite-difference coefficients by default

Return the infeasible solution from every solve instead of raising

KEGG database, solver tolerance and zero-total f factor as in GECKO

Remove the references to the retired Bayesian kcat tuning (#73)

Remove the references to the retired Bayesian kcat tuning

Same results as GECKO for subsets, subsystems, uniprot cells, FSEOF and pFBA; scipy solver support

Same results as GECKO for subsets, subsystems, uniprot cells, FSEOF and pFBA; scipy solver support

Workflow runs for tests

122 workflow runs