v1.6.3

[jhollway]

Description

Package

• Removed %>% reexport plumbing and refreshed generated reexport docs accordingly

Testing

• Updated diffusion goodness-of-fit logic (test_fit()) and its tests to use the newer diffusion representation (notably t)

Checklist:

• Documentation
  • DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)
  • Date in DESCRIPTION is correct
  • Longer functions are commented inline or broken down into helper functions to help debugging
• PR form
  • Title indicates expected version number
  • PR description above and the NEWS.md file are aligned
  • Description above itemizes changes under subsection titles, e.g. "## Data""
  • Closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"

[Copilot]

Pull request overview

Release-oriented update for migraph v1.6.3, primarily aligning the package with newer {manynet} expectations (diffusion model structure) and cleaning up exports/docs/packaging metadata to address downstream/reverse-dependency friction.

Changes:

• Updated diffusion goodness-of-fit logic (test_fit()) and its tests to use the newer diffusion representation (notably t).
• Removed %>% reexport plumbing and refreshed generated reexport docs accordingly.
• Bumped package/dependency metadata and refreshed CRAN/build ignore settings and Rd formatting.

Reviewed changes

Copilot reviewed 9 out of 16 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
tests/testthat/test-tutorials_autograph.R	Removes a stray trailing line from the test file.
tests/testthat/test-model_distrib.R	Wraps play_diffusion() with as_diffusion() for test_fit() input.
R/reexports_classes.R	Removes the roxygen reexport stub for %>% (file deleted).
R/model_distrib.R	Updates test_fit() to use t and adjusts simulation reshaping accordingly.
R/migraph-package.R	Updates global variable declarations used to suppress R CMD check notes.
NAMESPACE	Drops %>% export and removes a redundant importFrom(dplyr, \%>%`)` entry.
man/tests.Rd	Trims trailing whitespace in “Other models:” seealso text.
man/test_distributions.Rd	Trims trailing whitespace in “Other models:” seealso text.
man/regression.Rd	Trims trailing whitespace in “Other models:” seealso text.
man/reexports.Rd	Updates reexports documentation to no longer mention %>% and modernizes generics links.
man/migraph-package.Rd	Adds an “Authors” subsection under \author{}.
DESCRIPTION	Bumps version to 1.6.3; raises R/manynet minimum versions; adds Config/roxygen2/version.
cran-comments.md	Updates submission notes to mention reverse dependency fixes.
.Rbuildignore	Ignores .positai and .claude.
.gitignore	Ignores .positai.

Files not reviewed (2)

• man/migraph-package.Rd: Generated file
• man/reexports.Rd: Generated file

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