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After performing a Roary analysis, some .gff files are missing during the visualization step using roary_plots

Status: Open.

#642 In sanger-pathogens/Roary;

· jiangjiani0910-hue opened on Dec 24, 2025

roary didn't give all output files

Status: Open.

#640 In sanger-pathogens/Roary;

· Hemaprasanth26 opened on Jul 8, 2025

Using of Roary pipeline

Status: Open.

#639 In sanger-pathogens/Roary;

· Jadoon03042000 opened on Jun 28, 2025

Perl error

Status: Open.

#638 In sanger-pathogens/Roary;

· DrDinhLuong opened on May 24, 2025

Not getting the roary output files

Status: Open.

#636 In sanger-pathogens/Roary;

· Yossma28 opened on Mar 31, 2025

'-y' open for 'adding gene inference' causes summary_statistics.txt to output incorrect core gene information.

Status: Open.

#635 In sanger-pathogens/Roary;

· NickJD opened on Feb 24, 2025

no newick geenration

Status: Open.

#634 In sanger-pathogens/Roary;

· Jagathis10 opened on Jan 20, 2025

How to use "-t" parameter in Roary

Status: Open.

#633 In sanger-pathogens/Roary;

· yvescen opened on Jan 12, 2025

Can't open file: proteome.faa

Status: Open.

#631 In sanger-pathogens/Roary;

· alanxelena opened on Dec 9, 2024

There is no tree in this file.

Status: Open.

#630 In sanger-pathogens/Roary;

· jiq7885 opened on Nov 26, 2024

No newick file

Status: Open.

#629 In sanger-pathogens/Roary;

· been9312 opened on Nov 18, 2024

Roary_plots missing core genes?

Status: Open.

#628 In sanger-pathogens/Roary;

· evanho550 opened on Nov 17, 2024