feat(analysis): finemap Top-N table generator (Fig 5 of chorus-article)#98
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…sis_figures render_finemap_table + the `finemap` subcommand produce Fig 5 (fig_rs9504151_finemap.png) for the chorus-article post: a clean Top-N causal-variant table from a prioritize_causal_variants run, highlighting the lead (rs9504151, #1) and the high-LD neighbour rs62384944. The article's figures/README.md and reproduce/ steps already reference `regenerate_analysis_figures.py finemap`; this commits the code behind it so Fig 5 is reproducible from the repo (ism/tf_scan were already committed in #96). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Adds
render_finemap_table+ thefinemapsubcommand toscripts/regenerate_analysis_figures.py. It renders the Top-N causal-variant prioritisation table (Fig 5,fig_rs9504151_finemap.png) from aprioritize_causal_variantsrun, highlighting the lead variant rs9504151 (#1) and demoting the high-LD neighbour rs62384944.Why: the chorus-article post's
figures/README.mdand reproduction steps already instruct readers to runregenerate_analysis_figures.py finemap, but the code behind it was never committed (onlyismandtf_scanlanded in #96). This closes that reproducibility gap so Fig 5 regenerates from the repo.No behavior change to existing commands; purely additive.
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