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new module: CNVKIT/COVERAGE

new moduleAdding a new moduleAdding a new module

Status: Open.

#11193 In nf-core/modules;

· aadecock opened on Apr 15, 2026

new module: humann

new moduleAdding a new moduleAdding a new module

Status: Open.

#11192 In nf-core/modules;

· vinisalazar opened on Apr 15, 2026

GUNZIP mangles filenames (replaces first occurence of extension, not last)

bugSomething isn't workingSomething isn't working

Status: Open.

#11191 In nf-core/modules;

· ivirshup opened on Apr 14, 2026

[BUG] msisensorpro/pro silently runs in hard-threshold fallback mode; baseline module missing

bugSomething isn't workingSomething isn't working

Status: Open.

#11188 In nf-core/modules;

· nh13 opened on Apr 14, 2026

new module: canvas_germline

new moduleAdding a new moduleAdding a new module

Status: Open.

#11163 In nf-core/modules;

· ktruve opened on Apr 13, 2026

new module: pharmcat/pipeline

new moduleAdding a new moduleAdding a new module

Status: Open.

#11158 In nf-core/modules;

· rkmishra3893 opened on Apr 11, 2026

new module: deeptools/bamcompare

new moduleAdding a new moduleAdding a new module

Status: Open.

#11146 In nf-core/modules;

· oliverdrechsel opened on Apr 10, 2026

Inconsistency of alignment subworkflows and aligner modules

bugSomething isn't workingSomething isn't working

Status: Open.

#11138 In nf-core/modules;

· Kevin-Brockers opened on Apr 8, 2026

Seqkit_pair unknown recognition error type: groovyjarjarantlr4.v4.runtime.LexerNoViableAltException

bugSomething isn't workingSomething isn't working

Status: Open.

#11090 In nf-core/modules;

· Slucking opened on Mar 30, 2026

[FEATURE] cellrangerarc/count should allow multiple input files with the same basename

enhancementNew feature or requestNew feature or request

Status: Open.

Enhancement

#11088 In nf-core/modules;

· tgelafr-pfzr opened on Mar 30, 2026

new module: poppunk/createdb

new moduleAdding a new moduleAdding a new module

Status: Open.

#11084 In nf-core/modules;

· cwoodside1278 opened on Mar 29, 2026

new module: metacerberus/annotation

new moduleAdding a new moduleAdding a new module

Status: Open.

#11083 In nf-core/modules;

· daasabogalro opened on Mar 28, 2026