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New versions of the tifffile and aicsimagio libraries have trouble reading some OME-TIFF images, including the outputs of our CODEX pipeline and 3D IMC datasets.
Add a pipeline step before SPRM that uses bfconvert to normalize the OME-XML metadata.
New versions of the
tifffileandaicsimagiolibraries have trouble reading some OME-TIFF images, including the outputs of our CODEX pipeline and 3D IMC datasets.Add a pipeline step before SPRM that uses
bfconvertto normalize the OME-XML metadata.