Issues

• New Seurat version not supported

  cellgeni/sceasy#98 · Filter by author Hrovatin opened on Sep 18, 2025
  1

• No module named 'anndata'

  cellgeni/sceasy#96 · Filter by author kangjialuo opened on Jul 18, 2025

• error raised while reading key '/layers' of type <class 'h5py._hl.group.Group' when converting h5ad to seurat object

  cellgeni/sceasy#93 · Filter by author pandaqiuqiu opened on Aug 22, 2024

• When encountering a NumPy-related error while using a conversion function on an Seurat object

  cellgeni/sceasy#91 · Filter by author Ares1314 opened on Jun 24, 2024
  4

• Question regarding conversion time from AnnData to Seurat object

  cellgeni/sceasy#90 · Filter by author qz91 opened on May 16, 2024

• Non-existent Function Documentation

  cellgeni/sceasy#89 · Filter by author DarioS opened on May 9, 2024

• I wonder that the h5ad file convert from Seurat, if it was read in scapy, where is the raw dada?

  cellgeni/sceasy#88 · Filter by author BioinfoXP opened on Apr 3, 2024
  1

• Converting Xenium object from R

  cellgeni/sceasy#87 · Filter by author man154 opened on Mar 12, 2024
  2

• failure to convert attributeError: 'dict' object has no attribute 'dtype'

  cellgeni/sceasy#85 · Filter by author Flu09 opened on Feb 6, 2024
  1

• Failure to convert SingleCellExperiment (trajectory analysis object) to h5ad

  cellgeni/sceasy#83 · Filter by author Yanst86 opened on Dec 27, 2023

• no slot of name "meta.features" for this object of class "Assay5"

  cellgeni/sceasy#82 · Filter by author Rohit-Satyam opened on Dec 21, 2023
  2

• convertFormat function do not support v5

  cellgeni/sceasy#81 · Filter by author ixxmu opened on Dec 8, 2023

• No module named 'numpy.core._multiarray_umath'

  cellgeni/sceasy#80 · Filter by author chrarnold opened on Sep 14, 2023

• Not possible to install from conda package

  cellgeni/sceasy#79 · Filter by author stevekm opened on Sep 12, 2023
  1

• Convert h5ad file to seurat file

  cellgeni/sceasy#78 · Filter by author sanderslhc opened on Aug 29, 2023
  11

• h5ad to Seurat conversion "AttributeError: 'dict' object has no attribute 'dtype'"

  cellgeni/sceasy#77 · Filter by author jestlin15 opened on Jul 20, 2023
  2

• Seurat Assay5

  cellgeni/sceasy#76 · Filter by author ValYianni opened on Jul 18, 2023
  5

• negative length vectors are not allowed : Error when converting anndata to seurat

  cellgeni/sceasy#75 · Filter by author bapoorva opened on Jul 14, 2023
  5

• Export feature loadings in anndata2seurat

  cellgeni/sceasy#74 · Filter by author Zepeng-Mu opened on Jun 22, 2023

• Hello everyone, I am having issues running sceasy for conversion from sce object to anndata. Following repo instructions, I run:

  cellgeni/sceasy#72 · Filter by author Pancreaticpathway opened on May 23, 2023
  3

• Spatial data

  cellgeni/sceasy#71 · Filter by author AndrewSkelton opened on May 10, 2023
  2

• memory issues trying to convert from anndata to Seurat

  cellgeni/sceasy#70 · Filter by author massisnascimento opened on Apr 26, 2023

• seurat to anndata formatting adata.X as CSC sparse resulting in inefficient handling

  cellgeni/sceasy#69 · Filter by author dpcook opened on Jan 19, 2023

• Evaluation error: Unable to convert R object to Python type

  cellgeni/sceasy#68 · Filter by author cperalta-viteri opened on Dec 19, 2022

• Problems setting up the proper environment

  cellgeni/sceasy#67 · Filter by author mariapozo opened on Dec 15, 2022
  1