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Fix CI build: upgrade rust-htslib 0.39.3 → 1.0.1 - #59

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brentp with Copilot wants to merge 2 commits into
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copilot/fix-github-actions-build
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brentp with Copilot wants to merge 2 commits into
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copilot/fix-github-actions-build

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Copilot AI commented Jul 22, 2026 •

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The CI build was broken because the 0.39.x versions of rust-htslib have been yanked from crates.io, and the previously resolved v0.39.5 failed to compile with nightly-2025-03-20 due to type mismatches (expected usize, found u64) in the upstream crate's HTSlib bindings.

Changes

  • Cargo.toml: Bump rust-htslib from "0.39.3" to "1.0.1" — the only change needed; the existing echtvar code is fully API-compatible with rust-htslib 1.0.x with no source modifications required.

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brentp commented Jul 22, 2026 •

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can we update to the most recent rust-htslib? @copilot

Copilot AI changed the title [WIP] Fix failing GitHub Actions job build Fix CI build: upgrade rust-htslib 0.39.3 → 1.0.1 Jul 22, 2026
Copilot AI requested a review from brentp July 22, 2026 04:37
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