Update by belleau · Pull Request #13 · belleau/methylInheritance

Commits on Feb 16, 2017

Commits on Feb 17, 2017

Add trusty distribution to travis file
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Remove r_build_args and r_check_args in travis file
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Remove slot() function in vignette. This closes #7.
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Clean travis file
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Merge runPermutationUsingMethylKitInfo() and runPermutationUsingRDSFile() to runPermutation(). This closes #8.
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cac24a8
Add example using using RDS file name
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Commits on Feb 20, 2017

Merge runObservationUsingMethylKitInfo() and runObservationUsingRDSFile() into one function. This closes #9.
adeschen
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35cd71b

Commits on Feb 21, 2017

Commits on Feb 22, 2017

Correct problem in saveInterGenerationResults() example. Correct typos.
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Correct typos in vignette
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Correct typos in datasets man pages and package man page
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Commits on Feb 23, 2017

Correct typo in loadAllRDSResults(), runObservation() and run Permutation() man pages
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Change permutated to shuffled in man pages and vignette
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Update extractInfo() man page
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Commits on Feb 24, 2017

Commits on Apr 7, 2017

Commits on Apr 12, 2017

Add checkpoint possibility
adeschen
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Commits on Apr 13, 2017

Better description of restartCalculation parameter
adeschen
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Merge pull request #14 from adeschen/restartCalculation
adeschen
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Solve problem in plotGraph() function
adeschen
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Add validation for new parameter restartCalculation
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Adding URL and BugReports fields to DESCRIPTION
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Solve note caused by plotgraph() function
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Add new section to vignette
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Merge branch 'restartCalculation'
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Commits on Apr 18, 2017

Change name of one parameter in calculateDiffMeth()
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Update link to methylInheritance package
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Save temp file
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Commits on Apr 19, 2017

Update vignette. Correct typo in man pages.
adeschen
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Merge pull request #15 from adeschen/calculateDiffMeth
adeschen
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acfa507

Commits on Apr 20, 2017

Adding saveInfoByGeneration parameter
adeschen
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Merge with master
adeschen
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Merge with master
a.deschenes
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Merge with master

Astrid Louise Deschenes
authored and
Astrid Louise Deschenes
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67b0236
Update version
a.deschenes
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Update version

Astrid Louise Deschenes
authored and
Astrid Louise Deschenes
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7f31667
Merge branch 'devel'
adeschen
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f53df0b

Commits on Apr 23, 2017

Change param used by bplapply
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Change to mclapply
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c9be540

Commits on Apr 24, 2017

Temporary remove output
adeschen
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bump x.y.z versions to even y prior to creation of 3_5 branch
Herve Pages
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bump x.y.z versions to odd y after creation of 3_5 branch
Herve Pages
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Commits on Apr 27, 2017

Split by nbre of cores
adeschen
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854f667

Commits on May 8, 2017

Correction in acknowledgment
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65e67e5
Adding plotConvergence() function
adeschen
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Merge
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9dad395
Correction in plotConvergence()
adeschen
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a8176bb

Commits on May 10, 2017

Update convergence functions
adeschen
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530bcb5
Adding unit tests. Cleaning code of plotConvergenceGraph().
adeschen
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16ecbb3

Commits on May 11, 2017

Adding unit tests
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Commits on May 12, 2017

Adding unit tests
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Adding unit test
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Adding unit test
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aa024a6

Commits on May 15, 2017

Adding unit tests for interGeneration() function
adeschen
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795c4f5

Commits on Oct 3, 2017

Fixed conflicts in version change.
adeschen
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c1b3f17
Adding Bioconductor section to README
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Update README.md
adeschen
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9557f16

Commits on Oct 9, 2017

Merge branch 'master' of https://github.com/adeschen/methylInheritance into parallelUpdate
adeschen
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Commits on Oct 11, 2017

Validating that DME analysis has been processed on data before saving results per generation to avoid replacing a good file with an empty file when process has been restarted.
adeschen
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27fd8fb

Commits on Oct 12, 2017

Commits on Oct 13, 2017

Updating documentation related to methods
adeschen
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8c1ea24
Update doc for runObservation() and runPermutation()
adeschen
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018fdaf
Update version
adeschen
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c3fd20d
Adding unit test for runPermutation
adeschen
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b83cd5a
Update .travis.yml
adeschen
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6c99488
Update .travis.yml
adeschen
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fae5465
Update documentation. Add unit tests.
adeschen
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423ee94
Update .travis.yml
adeschen
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aba0ca6
Update version to 1.1.3
adeschen
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0e2c584

Commits on Oct 14, 2017

Add URL and BugReport to DESCRIPTION. Update version.
adeschen
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79fb3f8

Commits on Oct 30, 2017

Commits on Feb 24, 2018

Update unit tests that were failing due to modifications in Bioconductor
adeschen
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3804614

Commits on Feb 26, 2018

Update .travis.yml
adeschen
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4575dca
Update to version 1.3.1
adeschen
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3056e3e

Commits on Mar 22, 2018

Update README.md
adeschen
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777ea0c

Commits on Mar 25, 2018

Merge branch 'master' of https://github.com/adeschen/methylInheritance
adeschen
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19774e8
Adding README text file
adeschen
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9a3ac22
Updating version to 1.3.2
adeschen
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Update README file
adeschen
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Commits on Apr 30, 2018

bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch
vobencha
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cf3b4e9
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch
vobencha
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ba941c6

Commits on Jul 18, 2018

Merge remote-tracking branch 'upstream/master'
adeschen
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Update README
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Remove README file
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Commits on Jul 20, 2018

Adding CITATION file
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Commits on Aug 7, 2018

Update readme file
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Commits on Aug 21, 2018

Update citing section of README
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Update citing section in vignette
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Commits on Aug 22, 2018

Update man page with latest roxygen2
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Update CITATION file
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Commits on Sep 29, 2018

Update version and news file
adeschen
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Update package description
adeschen
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c7fcdc1
Update version to 1.5.2
adeschen
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Commits on Oct 30, 2018

Commits on Nov 30, 2018

Update vignette so every section run
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Adding ImmunoOncology to biocViews
adeschen
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Update version to 1.7.1
adeschen
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Commits on Dec 5, 2018

Add license badge
adeschen
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Commits on Apr 2, 2019

Update unit test to fit new version of methylKit
adeschen
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a36360c
Update release version to 1.7.2
adeschen
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Commits on May 2, 2019

Commits on Oct 29, 2019

Commits on Apr 27, 2020

Commits on Oct 27, 2020

Commits on Apr 6, 2021

New demo permutation/observation files in two different sub-directories
adeschen
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976175d
Correct bug in loadConvergenceData() when permutation files and observation file are in separated directories
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2e7dc1f
Use bioc-release with travis
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c476def
Run roxygenise()
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Change 1:... to seq_len()
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Change class() for is() and T/F to TRUE/FALSE in test units
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Commits on Apr 7, 2021

Commits on Apr 19, 2021

Update cache in check-bioc.yml
adeschen
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257421c

Commits on May 19, 2021

Commits on Oct 26, 2021

Commits on Nov 21, 2021

Pass serialized S4 instances thru updateObject()
hpages
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Commits on Apr 26, 2022

Commits on Nov 1, 2022

Commits on Apr 25, 2023

Commits on Oct 24, 2023

Commits on Apr 30, 2024

Commits on Oct 29, 2024

Commits on Apr 15, 2025

Commits on Sep 15, 2025

Merge remote-tracking branch 'upstream/devel'
adeschen
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469f5a1

Commits on Sep 16, 2025

Update code to remove ggplot2 error and update doc
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Update github action
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Update github action
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Update github action
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Update github action
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Update github action
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Update github action
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Update github action
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Update github action
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Update github action
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Update items in doc
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Update items in doc
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Update doc vor saveIneterGenrationResults()
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Update github action
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Update doc for readInterGenerationResults()
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Update runOnePermutationOnAllGenerations() doc
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Update doc for demoForTransgenerationalAnalysis dataset
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Update github action
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Update check-bioc.yml
adeschen
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Merge pull request #19 from adeschen/adeschen-patch-1
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Update doc
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Update doc
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Update package version to 1.33.1
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Update doc
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Update github action
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Update github action
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Update github action
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Update github action
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New github test coverage action
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Commits

Commits on Jan 31, 2017

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Commits on Feb 24, 2017

Commits on Apr 7, 2017

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Commits on Apr 13, 2017

Commits on Apr 18, 2017

Commits on Apr 19, 2017

Commits on Apr 20, 2017

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Commits on Apr 24, 2017

Commits on Apr 27, 2017

Commits on May 8, 2017

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Commits on May 11, 2017

Commits on May 12, 2017

Commits on May 15, 2017

Commits on Oct 3, 2017

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Commits on Oct 11, 2017

Commits on Oct 12, 2017

Commits on Oct 13, 2017

Commits on Oct 14, 2017

Commits on Oct 30, 2017

Commits on Feb 24, 2018

Commits on Feb 26, 2018

Commits on Mar 22, 2018

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Commits on Apr 30, 2018

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Commits on Jul 20, 2018