v2.3.1

What's Changed

• Transcriptome mapping by @wilfriedguiblet in #149
• complete feature branch merge by @slsevilla in #151
• Fix bug from barcodeQC rule bc65f11

Full Changelog: v2.3.0...v2.3.1

v2.3.0

added functionality to config for

• minimum read mapped percentage
• limitOutSJcollapsed

v2.2.1

• fix bug with config parsing and spaces
• add controls over module defaults
• add flag to turn off qc_barcodes
• improve barcode detection to include large samples

version 2.2

features added:

• additional annotation improvements
• add QC thresholds for unaligned reads

version 2.1

Updates to peak calling to increase speed; MANORM report updated with error logs for non-overlapping samples

version 1.8

Final version before alignment/demux/adaptor changes.

version 2.0

Creating first version of v2.0 pipeline; significant deviations from v1.8

• change alignment from novoalign to star
• change demultiplex software
• remove MAPQ calculations and BAM changes

version 1.0

version 1.0 tagged

version 0.6

Release includes increasing multiplexed sample count to 10, output of unmapped reads, and new index / container locations

version v0.5

non-demultiplex branch of pipeline added