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Feature request: allow for silent/verbose mode #17
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Activity
@XiaoshanShao: has this been closed because it is implemented or because it will not be?
I believe mhcnuggets' output only goes to log file if you did not provide an output path to it under the
outputflag as shown in this section of the code:if output: filehandle = open(output, 'w') else: filehandle = sys.stdoutDo you wish to not output indication message such as which alleles it is predicting against or how many peptides it is predicting?
I believe mhcnuggets' output only goes to log file if you did not provide an output path to it under the output flag [...]
Yes, that is correct.
Do you wish to not output indication message such as which alleles it is predicting against or how many peptides it is predicting?
Yes, that is where I was referring to: I would enjoy to run MHCnuggets without any output. Here is an example from my log files:
Predicting for 2616 peptides Number of peptides skipped/total due to length 0 / 0 Building model Closest allele found HLA-A01:01 BA_to_HLAp model found, predicting with BA_to_HLAp model... Using TensorFlow backend.
Dear MHCnuggets maintainer,
I have written a package to call MHCnuggets from R. However, when I call the
predictfunction, MHCnuggets produces output, which (1) I cannot prevent, and (2) clutters the log files. Taking a look at the code, one can observe that there are noifstatements around the output.I suggest to add a silent/verbose mode, so that it is possible to run MHCnuggets without having output.