chore: transfer repository to JuliaDiff

.github/workflows/CI.yml

@@ -47,7 +47,7 @@ jobs:
       - uses: codecov/codecov-action@v7
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
-          slug: adrhill/SparseConnectivityTracer.jl
+          slug: JuliaDiff/SparseConnectivityTracer.jl
           files: lcov.info
   docs:
     name: Documentation

CITATION.cff

@@ -10,7 +10,7 @@ authors:
 title: "SparseConnectivityTracer.jl"
 version: 0.1.0
 date-released: 2024-04-22
-url: "https://github.com/adrhill/SparseConnectivityTracer.jl"
+url: "https://github.com/JuliaDiff/SparseConnectivityTracer.jl"
 preferred-citation:
   type: article
   authors:

README.md

@@ -1,8 +1,8 @@
 # SparseConnectivityTracer.jl
 |               |                                                                     | 
 |:--------------|:--------------------------------------------------------------------|
-| Documentation | [![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://adrhill.github.io/SparseConnectivityTracer.jl/stable/) [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://adrhill.github.io/SparseConnectivityTracer.jl/dev/) [![Changelog](https://img.shields.io/badge/news-changelog-yellow.svg)](https://github.com/adrhill/SparseConnectivityTracer.jl/blob/main/CHANGELOG.md) |
-| Build Status  | [![Build Status](https://github.com/adrhill/SparseConnectivityTracer.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/adrhill/SparseConnectivityTracer.jl/actions/workflows/CI.yml?query=branch%3Amain) [![Coverage](https://codecov.io/gh/adrhill/SparseConnectivityTracer.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/adrhill/SparseConnectivityTracer.jl) [![Aqua](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) [![JET](https://img.shields.io/badge/%F0%9F%9B%A9%EF%B8%8F_tested_with-JET.jl-233f9a.svg)](https://github.com/aviatesk/JET.jl) |
+| Documentation | [![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliadiff.github.io/SparseConnectivityTracer.jl/stable/) [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliadiff.github.io/SparseConnectivityTracer.jl/dev/) [![Changelog](https://img.shields.io/badge/news-changelog-yellow.svg)](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/blob/main/CHANGELOG.md) |
+| Build Status  | [![Build Status](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/actions/workflows/CI.yml?query=branch%3Amain) [![Coverage](https://codecov.io/gh/JuliaDiff/SparseConnectivityTracer.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/JuliaDiff/SparseConnectivityTracer.jl) [![Aqua](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl) [![JET](https://img.shields.io/badge/%F0%9F%9B%A9%EF%B8%8F_tested_with-JET.jl-233f9a.svg)](https://github.com/aviatesk/JET.jl) |
 | Code Style    | [![Code Style: Runic](https://img.shields.io/badge/code_style-%E1%9A%B1%E1%9A%A2%E1%9A%BE%E1%9B%81%E1%9A%B2-black)](https://github.com/fredrikekre/Runic.jl) [![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac) | 
 | Downloads     | [![Downloads](https://img.shields.io/badge/dynamic/json?url=http%3A%2F%2Fjuliapkgstats.com%2Fapi%2Fv1%2Fmonthly_downloads%2FSparseConnectivityTracer&query=total_requests&suffix=%2Fmonth&label=Downloads)](http://juliapkgstats.com/pkg/SparseConnectivityTracer) [![Dependents](https://juliahub.com/docs/General/SparseConnectivityTracer/stable/deps.svg)](https://juliahub.com/ui/Packages/General/SparseConnectivityTracer?t=2) |
 | Citation      | [![arXiv DOI](https://img.shields.io/badge/DOI-10.48550/arXiv.2501.17737-red)](https://arxiv.org/abs/2501.17737) [![Zenodo DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13138554.svg)](https://zenodo.org/doi/10.5281/zenodo.13138554) |

docs/make.jl

@@ -18,7 +18,7 @@ makedocs(;
     authors = "Adrian Hill <gh@adrianhill.de>",
     sitename = "SparseConnectivityTracer.jl",
     format = Documenter.HTML(;
-        canonical = "https://adrhill.github.io/SparseConnectivityTracer.jl",
+        canonical = "https://juliadiff.github.io/SparseConnectivityTracer.jl",
         edit_link = "main",
         assets = ["assets/favicon.ico"],
     ),
@@ -35,4 +35,4 @@ makedocs(;
     warnonly = [:missing_docs],
 )
 
-deploydocs(; repo = "github.com/adrhill/SparseConnectivityTracer.jl", devbranch = "main")
+deploydocs(; repo = "github.com/JuliaDiff/SparseConnectivityTracer.jl", devbranch = "main")

docs/src/internals/adding_overloads.md

@@ -17,7 +17,7 @@ to improve the performance of your functions or to work around some of SCT's [li
 ## Generated overloads
 
 !!! tip "Copy one of our package extensions"
-    The easiest way to add overloads is to copy one of our package extensions, [e.g. our NNlib extension](https://github.com/adrhill/SparseConnectivityTracer.jl/blob/main/ext/SparseConnectivityTracerNNlibExt.jl), and to modify it.
+    The easiest way to add overloads is to copy one of our package extensions, [e.g. our NNlib extension](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/blob/main/ext/SparseConnectivityTracerNNlibExt.jl), and to modify it.
     Please upstream your additions by opening a pull request! We will help you out to get your feature merged.
 
 ### Operator classification
@@ -132,7 +132,7 @@ You are required to call the function that matches your type of operator.
 
 ### Example
 
-For some examples on how to overload methods, take a look at our [package extensions](https://github.com/adrhill/SparseConnectivityTracer.jl/tree/main/ext).
+For some examples on how to overload methods, take a look at our [package extensions](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/tree/main/ext).
 Let's look at the `relu` activation function from `ext/SparseConnectivityTracerNNlibExt.jl`, which is a 1-to-1 operator defined as $\text{relu}(x) = \text{max}(0, x)$.
 
 #### Step 1: Classification

docs/src/user/api.md

@@ -38,4 +38,4 @@ Please note that the `DiffCache` from
 [PreallocationTools.jl](https://github.com/SciML/PreallocationTools.jl)
 can be used to make caches compatible with both
 [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl) and
-[SparseConnectivityTracer.jl](https://github.com/adrhill/SparseConnectivityTracer.jl/).
+[SparseConnectivityTracer.jl](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/).

docs/src/user/limitations.md

@@ -3,10 +3,10 @@
 ## Sparsity patterns are conservative approximations
 
 Sparsity patterns returned by SparseConnectivityTracer (SCT) can in some cases be overly conservative, meaning that they might contain "too many ones".
-If you observe an overly conservative pattern, [please open a feature request](https://github.com/adrhill/SparseConnectivityTracer.jl/issues) so we know where to add more method overloads to increase the sparsity.
+If you observe an overly conservative pattern, [please open a feature request](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/issues) so we know where to add more method overloads to increase the sparsity.
 
 !!! warning "SCT's no-false-negatives policy"
-    If you ever observe a sparsity pattern that contains too many zeros, we urge you to [open a bug report](https://github.com/adrhill/SparseConnectivityTracer.jl/issues)!
+    If you ever observe a sparsity pattern that contains too many zeros, we urge you to [open a bug report](https://github.com/JuliaDiff/SparseConnectivityTracer.jl/issues)!
 
 ## Function must be composed of generic Julia functions
 

src/adtypes_interface.jl

@@ -43,7 +43,7 @@ const DOC_KWARGS = """# Keyword arguments
   Defaults to `false`.
 
 If support for further pattern representations is needed, please open a feature request:
-https://github.com/adrhill/SparseConnectivityTracer.jl/issues
+https://github.com/JuliaDiff/SparseConnectivityTracer.jl/issues
 """
 
 """

test/classification.jl

@@ -148,8 +148,8 @@ end
         @testset "$op" for op in test_operators_2_to_1(Val(Symbol(m)))
             @test all(
                 correct_classification_2_to_1(
-                        op, random_first_input(op), random_second_input(op); atol = DEFAULT_ATOL
-                    ) for _ in 1:DEFAULT_TRIALS
+                    op, random_first_input(op), random_second_input(op); atol = DEFAULT_ATOL
+                ) for _ in 1:DEFAULT_TRIALS
             )
             yield()
         end

test/test_arrays.jl

@@ -639,7 +639,7 @@ end
     end
     @testset "Local" begin
         @testset "$P" for P in (Float32, BigFloat)
-            # https://github.com/adrhill/SparseConnectivityTracer.jl/issues/235
+            # https://github.com/JuliaDiff/SparseConnectivityTracer.jl/issues/235
 
             A_p = rand(P, 2, 2)
             A_d = Dual.(A_p, A_t)