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Parallelized version of needlestack.r

Status: Open.

#195 In IARCbioinfo/needlestack;

· veenarajaraman opened on Oct 21, 2024

nextflow no long support DSL1

Status: Open.

#194 In IARCbioinfo/needlestack;

· lxm1117 opened on Dec 6, 2023

--output_vcf parameter doesn't work when including a relative path

Status: Open.

#192 In IARCbioinfo/needlestack;

· Fer020707 opened on Jan 23, 2022

Advice about running on gcs?

Status: Open.

#190 In IARCbioinfo/needlestack;

· njbernstein opened on Apr 28, 2021

migrate to CircleCI 2.0

bug

enhancement

Status: Open.

#183 In IARCbioinfo/needlestack;

· tdelhomme opened on Aug 17, 2018

Disambiguation between allelic fraction and allele frequency

enhancement

help wanted

Status: Open.

#181 In IARCbioinfo/needlestack;

· chabriera opened on Jun 20, 2018

·  

v1.1

rename output options

enhancement

Status: Open.

#179 In IARCbioinfo/needlestack;

· mfoll opened on Jun 20, 2018

·  

v1.1

Input in first process missing

Status: Open.

#178 In IARCbioinfo/needlestack;

· luisas opened on Jun 8, 2018

correct insertion extraction from mpileup

bug

external needresolving the issue needs external updates on dependenciesresolving the issue needs external updates on dependencies

Status: Open.

#175 In IARCbioinfo/needlestack;

· tdelhomme opened on May 9, 2018

·  

v1.1

improve output VCF header

enhancement

Status: Open.

#155 In IARCbioinfo/needlestack;

· tdelhomme opened on Mar 14, 2017

Consider removing the BAQ option in samtools mpileup

Status: Open.

#154 In IARCbioinfo/needlestack;

· mfoll opened on Mar 8, 2017

Try new robust Negative Binomial regression

enhancement

help wanted

question

Status: Open.

#143 In IARCbioinfo/needlestack;

· mfoll opened on Jan 18, 2017