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CompMetEng
raven-toolbox
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read_yaml_model reads empty enzymes maps and quotes inside values; fseof follows ecFSEOF
- #185
#185
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edkerk
merged 6 commits into
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CompMetEng/raven-toolbox:develop
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fix/yaml-ec-readers-fseof
CompMetEng/raven-toolbox:fix/yaml-ec-readers-fseof
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Oct 30, 2026
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read_yaml_model reads empty enzymes maps and quotes inside values; fseof follows ecFSEOF
#185
edkerk
merged 6 commits into
develop
CompMetEng/raven-toolbox:develop
from
fix/yaml-ec-readers-fseof
CompMetEng/raven-toolbox:fix/yaml-ec-readers-fseof
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Commits on Oct 29, 2026
fix: read_yaml_model reads empty enzymes omaps and doubled-quote scalars
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fix: read_yaml_model keeps an unescaped quote inside a double-quoted value
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fix: fseof holds the objective at 0.999999 of its optimum in the pFBA step
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fix: read_yaml_model keeps an apostrophe inside a single-quoted value
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fix: fseof takes its top level from the pFBA maximum, sorts stably and can fix the target
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Commits on Oct 30, 2026
fix: sort the fseof imports and name the exception the invalid-YAML test expects
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