Issues

• ec.source: one format, one parser and a record of tuning

  enhancementgecko
  CompMetEng/raven-gecko-parity#151 · Filter by author edkerk opened on Nov 7, 2026

• sampling: ecModels need a net-flux sampler; generic samplers give biased results

  enhancementgecko
  CompMetEng/raven-gecko-parity#122 · Filter by author edkerk opened on Sep 19, 2026

• reviewKcatAssignment: split the magnitude check by match quality and by whether the reaction carries flux

  enhancementgecko
  CompMetEng/raven-gecko-parity#121 · Filter by author edkerk opened on Sep 19, 2026

• applyComplexData: subunit stoichiometry falls back to 1:1 without a record

  enhancementgecko
  CompMetEng/raven-gecko-parity#120 · Filter by author edkerk opened on Sep 19, 2026

• ec.concs: separate the measured concentration from the bound that is applied

  enhancementgecko
  CompMetEng/raven-gecko-parity#119 · Filter by author edkerk opened on Sep 19, 2026

• enzyme_usage: report demanded protein against measured protein as a standard diagnostic

  enhancementfixed in developgecko
  CompMetEng/raven-gecko-parity#118 · Filter by author edkerk opened on Sep 19, 2026
  1

• limit_proteins: make a set of conditions the unit of work, not a single model

  enhancementgecko
  CompMetEng/raven-gecko-parity#116 · Filter by author edkerk opened on Sep 19, 2026

• kcat provenance: record match quality as a number and use it to choose what to correct

  enhancementgecko
  CompMetEng/raven-gecko-parity#115 · Filter by author edkerk opened on Sep 19, 2026

• kmax: add a function deriving the kcat a measured enzyme concentration requires, across conditions

  enhancementgecko
  CompMetEng/raven-gecko-parity#114 · Filter by author edkerk opened on Sep 19, 2026

• RAVEN's SCIP support (MATLAB) is Windows-only in practice; needs all-platform binaries

  CompMetEng/raven-gecko-parity#103 · Filter by author edkerk opened on Sep 6, 2026

• confidence: per-reaction multi-facet scoring has no RAVEN counterpart or ledger entry

  enhancementraven
  CompMetEng/raven-gecko-parity#85 · Filter by author edkerk opened on Aug 30, 2026

• localization: transporter-evidence scoring has no RAVEN counterpart yet

  enhancementraven
  CompMetEng/raven-gecko-parity#20 · Filter by author edkerk opened on Aug 28, 2026
  3