feat: Record + Z-Stack acquisition mode#564

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hongquanli wants to merge 63 commits into

feat/record-zstack-acquisition

Commits on Jun 21, 2026

feat(camera): add best-effort set_frame_rate hint to AbstractCamera
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feat(camera): SimulatedCamera honors set_frame_rate in continuous stream

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feat(camera): ToupcamCamera.set_frame_rate via PRECISE_FRAMERATE
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refactor: extract MultiPointWorkerBase (no behavior change)

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refactor: extract create_experiment_dir helper into acquisition_setup.py (no behavior change)

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feat(streaming): add CountStop + RecordingRouter (pure)

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feat(streaming): RecordingWriter (bounded queue + thread -> ZarrWriter)

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fix(streaming): drain thread solely owns ZarrWriter lifecycle (no abort/write race)

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feat(streaming): ContinuousFrameSource + StreamingCapture orchestrator

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fix(streaming): move CameraAcquisitionMode import to top (no real cycle); document stop/finalize assumption

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feat(record-zstack): params + pure planning helpers

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test(record-zstack): cover validation paths + document epsilon

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feat(record-zstack): RecordZStackWorker (record + zstack per FOV)

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feat(record-zstack): RecordZStackController + ZarrWriter daemon-thread fix

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feat(record-zstack): RecordZStackMultiPointWidget + validation

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fix(record-zstack): correct laser-AF reference check + dedup zstack row table

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feat(record-zstack): inline channel editors, Copy-from-Live, computed labels

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test(record-zstack): tighten invalid-range plane-label assertion + docstring

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feat(record-zstack): Start/Stop handoff to RecordZStackController

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feat(record-zstack): add Record + Z-Stack tab to gui_hcs (ENABLE_RECORDING)

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feat(record-zstack): widget finished/progress slots for gui_hcs wiring

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fix(record-zstack): add recordZStackWidget None sentinel (gui_hcs)

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fix(record-zstack): illumination, trigger mode, streaming & live-view lifecycle

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fix: harden streaming_capture (fps order, start error path, OOB gating, non-blocking enqueue, abort sealing, partial warning)

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fix(record-zstack): batch-3 correctness, threading, and simplification fixes

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refactor: DRY batch 4 — lift _wait_for_outstanding_callback_images to base, extract compute_pixel_size_um, drop redundant _job_runners re-assignments, fix misleading __class__ comment

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fix: Wire signal_acquisition_started for Record+Z-Stack UI lockout (fix-batch5)

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fix: emit signal_acquisition_started(True) before spawning worker thread

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Commits on Jun 22, 2026

Commits on Jun 28, 2026

Commits on Jun 29, 2026

fix(record-zstack): clear stale FOV regions before re-geometrying + allow sub-0.1um z-step

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Commits on Jun 30, 2026

test(record-zstack): skip tensorstore-dependent tests when it's absent (CI)

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Commits on Jul 4, 2026

Commits on Jul 5, 2026