include-access-model/src/include_access_model/schema/include_access_model.yaml at main · include-dcc/include-access-model · GitHub

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---
id: https://includedcc.org/include-access-model
name: include-access-model
title: INCLUDE DCC Access Model
description: LinkML Schema for the internal INCLUDE DCC Access Model
license: MIT
see_also:
  - https://includedcc.github.io/include-access-model

prefixes:
  includedcc: https://includedcc.org/include-access-model/
  cam: https://includedcc.org/common-access-model/
  linkml: https://w3id.org/linkml/
  schema: http://schema.org/
 # subset of CDC Race and Ethnicity Code Set Version 1.0
  cdc_race_eth: urn:oid:2.16.840.1.113883.6.238/
  hl7_null: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/
  ig_dob_method: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/
  igcondtype: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/
  ig2dac: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/
  ig2dat: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/
  ig2_biospecimen_availability: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/
  snomed_ct: 	http://snomed.info/id/
  MONDO: http://purl.obolibrary.org/obo/MONDO_
  HP: http://purl.obolibrary.org/obo/HP_
  mesh: http://id.nlm.nih.gov/mesh/
  NCIT: http://purl.obolibrary.org/obo/NCIT_
  PATO: http://purl.obolibrary.org/obo/PATO_
  DUO: http://purl.obolibrary.org/obo/DUO_


default_prefix: includedcc
default_range: linkml:string

imports:
  - linkml:types
  - common-access-model/src/common_access_model/schema/common_access_model

classes:
  IncludeParticipant:
    title: INCLUDE Participant
    description: Information specific to INCLUDE participants
    is_a: Demographics
    slots:
      - down_syndrome_status

slots:
  down_syndrome_status:
    title: Down Syndrome Status
    description: Down Syndrome status of participant
    range: EnumDownSyndromeStatus
    required: true

enums:
  EnumDownSyndromeStatus:
    description: Down syndrome / chromosome 21 status
    permissible_values:
      d21:
        title: D21
        description: Disomy 21 (euploid)
        meaning: PATO:0001393
      t21:
        title: T21
        description: Trisomy 21 (Down syndrome)
        meaning: MONDO:0008608