From 8b1828f889a29d0d061fdab94456a14847e5b80d Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:34:24 +0200
Subject: [PATCH 01/24] Initialize project.

---
 .github/workflows/CI.yml       |   0
 .vscode/configurationCache.log |   1 +
 .vscode/settings.json          |   3 +
 .vscode/targets.log            | 327 +++++++++++++++++++++++++++++++++
 4 files changed, 331 insertions(+)
 create mode 100644 .github/workflows/CI.yml
 create mode 100644 .vscode/configurationCache.log
 create mode 100644 .vscode/settings.json
 create mode 100644 .vscode/targets.log

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
new file mode 100644
index 0000000..e69de29
diff --git a/.vscode/configurationCache.log b/.vscode/configurationCache.log
new file mode 100644
index 0000000..cf7efd3
--- /dev/null
+++ b/.vscode/configurationCache.log
@@ -0,0 +1 @@
+{"buildTargets":["all","ri36"],"launchTargets":["/home/tommaso/Documents/RI>ri36()"],"customConfigurationProvider":{"workspaceBrowse":{"browsePath":["/home/tommaso/Documents/RI","/home/tommaso/Documents/RI/include/","/home/tommaso/Documents/RI/rilib/"],"compilerArgs":["-c","-O3","ri3.cpp","-o","ri3.o"],"compilerPath":"/usr/bin/g++","windowsSdkVersion":""},"fileIndex":[["/home/tommaso/Documents/RI/ri3.cpp",{"uri":{"$mid":1,"fsPath":"/home/tommaso/Documents/RI/ri3.cpp","path":"/home/tommaso/Documents/RI/ri3.cpp","scheme":"file"},"configuration":{"defines":[],"includePath":["/home/tommaso/Documents/RI/rilib/","/home/tommaso/Documents/RI/include/"],"forcedInclude":[],"compilerPath":"/usr/bin/g++","compilerArgs":["-c","-O3","ri3.cpp","-o","ri3.o"],"windowsSdkVersion":""},"compileCommand":{"command":"g++ -c -O3 ri3.cpp -I ./rilib/ -I ./include/ -o ri3.o  ","directory":"/home/tommaso/Documents/RI","file":"/home/tommaso/Documents/RI/ri3.cpp"}}]]}}
\ No newline at end of file
diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 0000000..65e1ec0
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,3 @@
+{
+    "makefile.extensionOutputFolder": "./.vscode"
+}
\ No newline at end of file
diff --git a/.vscode/targets.log b/.vscode/targets.log
new file mode 100644
index 0000000..ce8ae7b
--- /dev/null
+++ b/.vscode/targets.log
@@ -0,0 +1,327 @@
+make all --print-data-base --no-builtin-variables --no-builtin-rules --question
+make: *** No rule to make target 'ri3.o', needed by 'ri36'.  Stop.
+
+# GNU Make 4.3
+# Built for x86_64-pc-linux-gnu
+# Copyright (C) 1988-2020 Free Software Foundation, Inc.
+# License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
+# This is free software: you are free to change and redistribute it.
+# There is NO WARRANTY, to the extent permitted by law.
+
+# Make data base, printed on Mon Jul 11 08:31:59 2022
+
+# Variables
+
+# environment
+GDK_BACKEND = x11
+# environment
+LC_ALL = C
+# environment
+GNOME_SHELL_SESSION_MODE = ubuntu
+# environment
+SSH_AGENT_LAUNCHER = gnome-keyring
+# environment
+GJS_DEBUG_OUTPUT = stderr
+# environment
+VSCODE_IPC_HOOK_EXTHOST = /run/user/1000/vscode-ipc-086cbccc-9936-4f88-a510-7311f25d9299.sock
+# environment
+LC_NAME = it_IT.UTF-8
+# environment
+LC_NUMERIC = it_IT.UTF-8
+# environment
+VSCODE_CWD = /home/tommaso
+# environment
+LC_ADDRESS = it_IT.UTF-8
+# default
+MAKE_COMMAND := make
+# environment
+QT_ACCESSIBILITY = 1
+# automatic
+@D = $(patsubst %/,%,$(dir $@))
+# environment
+VSCODE_HANDLES_UNCAUGHT_ERRORS = true
+# default
+.VARIABLES := 
+# environment
+PWD = /home/tommaso/Documents/RI
+# automatic
+%D = $(patsubst %/,%,$(dir $%))
+# environment
+XDG_DATA_DIRS = /usr/share/ubuntu-wayland:/usr/local/share/:/usr/share/
+# automatic
+^D = $(patsubst %/,%,$(dir $^))
+# environment
+VSCODE_LOG_STACK = false
+# automatic
+%F = $(notdir $%)
+# environment
+VSCODE_CODE_CACHE_PATH = /home/tommaso/.config/Code/CachedData/30d9c6cd9483b2cc586687151bcbcd635f373630
+# environment
+LANG = C
+# environment
+XAUTHORITY = /run/user/1000/.mutter-Xwaylandauth.9KN9O1
+# default
+.LOADED := 
+# default
+.INCLUDE_DIRS = /usr/local/include /usr/include /usr/include
+# makefile
+MAKEFLAGS = pqrR
+# makefile
+CURDIR := /home/tommaso/Documents/RI
+# environment
+VSCODE_PIPE_LOGGING = true
+# environment
+APPLICATION_INSIGHTS_NO_DIAGNOSTIC_CHANNEL = true
+# environment
+LESSOPEN = | /usr/bin/lesspipe %s
+# automatic
+*D = $(patsubst %/,%,$(dir $*))
+# environment
+MFLAGS = -pqrR
+# environment
+SSH_AUTH_SOCK = /run/user/1000/keyring/ssh
+# default
+.SHELLFLAGS := -c
+# environment
+WAYLAND_DISPLAY = wayland-0
+# environment
+XDG_CONFIG_DIRS = /etc/xdg/xdg-ubuntu-wayland:/etc/xdg
+# automatic
++D = $(patsubst %/,%,$(dir $+))
+# environment
+XDG_SESSION_DESKTOP = ubuntu-wayland
+# makefile (from 'makefile', line 1)
+MAKEFILE_LIST := makefile
+# automatic
+@F = $(notdir $@)
+# environment
+VSCODE_VERBOSE_LOGGING = true
+# environment
+VSCODE_PID = 4216
+# environment
+XDG_SESSION_TYPE = wayland
+# automatic
+?D = $(patsubst %/,%,$(dir $?))
+# makefile (from 'makefile', line 1)
+INCLUDES = -I ./rilib/ -I ./include/
+# environment
+SESSION_MANAGER = local/Ubuntu:@/tmp/.ICE-unix/1511,unix/Ubuntu:/tmp/.ICE-unix/1511
+# automatic
+*F = $(notdir $*)
+# environment
+CHROME_DESKTOP = code-url-handler.desktop
+# environment
+DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/1000/bus
+# automatic
+<D = $(patsubst %/,%,$(dir $<))
+# environment
+VSCODE_NLS_CONFIG = {"locale":"en-us","availableLanguages":{},"_languagePackSupport":true}
+# default
+MAKE_HOST := x86_64-pc-linux-gnu
+# environment
+GNOME_DESKTOP_SESSION_ID = this-is-deprecated
+# makefile
+SHELL = /bin/sh
+# default
+MAKECMDGOALS := all
+# environment
+XMODIFIERS = @im=ibus
+# environment
+GJS_DEBUG_TOPICS = JS ERROR;JS LOG
+# environment
+SHLVL = 0
+# environment
+MAKELEVEL := 0
+# environment
+IM_CONFIG_CHECK_ENV = 1
+# default
+MAKE = $(MAKE_COMMAND)
+# environment
+PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+# default
+MAKEFILES := 
+# environment
+LC_MONETARY = it_IT.UTF-8
+# automatic
+^F = $(notdir $^)
+# environment
+LC_TIME = it_IT.UTF-8
+# environment
+INVOCATION_ID = 9c8fa17668c949e7aa34355af0e314d7
+# environment
+VSCODE_LOG_NATIVE = false
+# environment
+USERNAME = tommaso
+# environment
+GNOME_SETUP_DISPLAY = :2
+# environment
+LC_TELEPHONE = it_IT.UTF-8
+# environment
+LESSCLOSE = /usr/bin/lesspipe %s %s
+# automatic
+?F = $(notdir $?)
+# environment
+XDG_CURRENT_DESKTOP = Unity
+# environment
+LS_COLORS = 
+# automatic
++F = $(notdir $+)
+# environment
+DESKTOP_SESSION = ubuntu-wayland
+# environment
+ORIGINAL_XDG_CURRENT_DESKTOP = ubuntu:GNOME
+# makefile (from 'makefile', line 6)
+OBJECTS = $(SOURCES:.cpp=.o)
+# 'override' directive
+GNUMAKEFLAGS := 
+# environment
+LOGNAME = tommaso
+# environment
+GIO_LAUNCHED_DESKTOP_FILE = /usr/share/applications/code.desktop
+# makefile
+.DEFAULT_GOAL := all
+# environment
+SYSTEMD_EXEC_PID = 1531
+# environment
+DISPLAY = :1
+# environment
+USER = tommaso
+# environment
+GTK_MODULES = gail:atk-bridge
+# default
+MAKE_VERSION := 4.3
+# environment
+MANAGERPID = 1376
+# makefile (from 'makefile', line 7)
+EXECUTABLE = ri36
+# environment
+LC_MEASUREMENT = it_IT.UTF-8
+# environment
+GIO_LAUNCHED_DESKTOP_FILE_PID = 4216
+# environment
+_ = /usr/share/code/code
+# environment
+LC_PAPER = it_IT.UTF-8
+# environment
+XDG_RUNTIME_DIR = /run/user/1000
+# makefile (from 'makefile', line 3)
+CFLAGS = -c -O3
+# environment
+JOURNAL_STREAM = 8:18271
+# environment
+XDG_SESSION_CLASS = user
+# environment
+VSCODE_AMD_ENTRYPOINT = vs/workbench/api/node/extensionHostProcess
+# environment
+HOME = /home/tommaso
+# environment
+QT_IM_MODULE = ibus
+# environment
+ELECTRON_RUN_AS_NODE = 1
+# environment
+VSCODE_IPC_HOOK = /run/user/1000/vscode-944e131e-1.68.1-main.sock
+# environment
+IM_CONFIG_PHASE = 1
+# default
+.RECIPEPREFIX := 
+# automatic
+<F = $(notdir $<)
+# default
+SUFFIXES := 
+# environment
+DEBUG = WARN
+# default
+.FEATURES := target-specific order-only second-expansion else-if shortest-stem undefine oneshell nocomment grouped-target extra-prereqs archives jobserver output-sync check-symlink load
+# makefile (from 'makefile', line 2)
+CC = g++
+# makefile (from 'makefile', line 5)
+SOURCES = ri3.cpp
+# environment
+XDG_MENU_PREFIX = gnome-
+# environment
+GDMSESSION = ubuntu-wayland
+# environment
+LC_IDENTIFICATION = it_IT.UTF-8
+# variable set hash-table stats:
+# Load=115/1024=11%, Rehash=0, Collisions=4/150=3%
+
+# Pattern-specific Variable Values
+
+# No pattern-specific variable values.
+
+# Directories
+
+# . (device 66309, inode 29229975): 15 files, no impossibilities.
+
+# 15 files, no impossibilities in 1 directories.
+
+# Implicit Rules
+
+# No implicit rules.
+
+# Files
+
+ri36: ri3.o
+#  Implicit rule search has not been done.
+#  Last modified 2022-07-11 08:30:10.826697731
+#  File has not been updated.
+#  recipe to execute (from 'makefile', line 13):
+	$(CC) $(OBJECTS) -o $@
+
+# Not a target:
+ri3.cpp:
+#  Implicit rule search has been done.
+#  Last modified 2022-07-11 08:30:10.826697731
+#  File has been updated.
+#  Successfully updated.
+
+.cpp.o:
+#  Implicit rule search has not been done.
+#  Modification time never checked.
+#  File has not been updated.
+#  recipe to execute (from 'makefile', line 16):
+	$(CC) $(CFLAGS) $< $(INCLUDES) -o $@  
+
+# Not a target:
+.DEFAULT:
+#  Implicit rule search has not been done.
+#  Modification time never checked.
+#  File has not been updated.
+
+all: ri3.cpp ri36
+#  Command line target.
+#  Implicit rule search has been done.
+#  File does not exist.
+#  File has not been updated.
+
+# Not a target:
+ri3.o:
+#  Implicit rule search has been done.
+#  File does not exist.
+#  File has not been updated.
+
+# Not a target:
+makefile:
+#  Implicit rule search has been done.
+ 
+#  Last modified 2022-07-11 08:30:10.826697731
+#  File has been updated.
+#  Successfully updated.
+
+# files hash-table stats:
+# Load=8/1024=1%, Rehash=0, Collisions=0/23=0%
+# VPATH Search Paths
+
+# No 'vpath' search paths.
+
+# No general ('VPATH' variable) search path.
+
+# strcache buffers: 1 (0) / strings = 22 / storage = 178 B / avg = 8 B
+# current buf: size = 8162 B / used = 178 B / count = 22 / avg = 8 B
+
+# strcache performance: lookups = 33 / hit rate = 33%
+# hash-table stats:
+# Load=22/8192=0%, Rehash=0, Collisions=0/33=0%
+# Finished Make data base on Mon Jul 11 08:31:59 2022
+
+ 

From 66a3e21e60488be506ae826c4cb230f4a01ad5b6 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:40:58 +0200
Subject: [PATCH 02/24] Set up actions.

---
 .github/workflows/CI.yml | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 delete mode 100644 .github/workflows/CI.yml

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
deleted file mode 100644
index e69de29..0000000

From 818c2c439baed347a2a4206f189ab9dcea80220b Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:42:43 +0200
Subject: [PATCH 03/24] remove compiled objects.

---
 ri36 | Bin 46756 -> 0 bytes
 1 file changed, 0 insertions(+), 0 deletions(-)
 delete mode 100755 ri36

diff --git a/ri36 b/ri36
deleted file mode 100755
index 265e33b25b9159cde24c3c5ae8cfc04e640e4a52..0000000000000000000000000000000000000000
GIT binary patch
literal 0
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z?FzP}jqs#d7;ky8F3kyuouKebLqI>lz7ZQ78+ML!uyd@rF@RbPzP!<k73)BXi<+{w
z^TDW3@|NIvZ18zDr|8rF*+vE$5H5M3tF0Md1BK0_{ZL{6WOL;V!!pC54d7wn#4fES
zI?IvRBI*8r07D;U8N1gYzJFVv#Yd>I1(w#NZV{-3`kKytLW4EH0#2!M^PO1?d)fdX
zLgUiHN@j9+JT(;oe@l%cfd9$bQ=AREjeW;9xuNvelL}Mq@hsTpNb@H&$!XFGi^bi~
zbcO4ajr1M5lYHwyW3X9_Nw|TuyA-Qw1`{Hj6tVxzV(0@M(Iz&T?+kAUz_){wl;kVM
zxxVF244y2;fy_t3Xq|7w3&}I}O`2XZHBO&-Njs2<4at*`dEBy-lAF~M8RkQ}F>MHD
z-^Hal5XO}sJNZy+N2<dV%HZL%Iq%TVwXpT@W-?*3LoN77FU~RSvjSdhPw*2(2d3Dq
zWN&5~0U5`57+?5>>Jq0mnSB6{)QE$uh^S2*N_^ay%)0f;GNSlENOoeHUa1e4q#Qsr
zWIcdLjFl{P>AZAr5tF(m5N_>=Zh$rGzzl5f#CM(HXBpN5sWB1?wl$`9WO7EPNh-GT
ze5xD$hH(=$tH+aRkn_@FI;HO<gu5sDGR*>^(P8!)h@rd38(KOa>Fy46;GLHCwqOem
z&jRag=}WSx;ry;e#<PI5IX|u)`j)9}efk;9vbOd3AT^FhB3-RC6sxLm@Mbd%`qTv?
zO<gIfP8A{Bc92u)D?7e+{qfG3m<?G5UD8oy`&8PsOYCgb&;X;|$v9m_9rpAw#}6jO
Mm@|Ajm<@~n13c(M_5c6?


From d20e1954a88b3f2e6ccd04e945628116d8d91d86 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:44:05 +0200
Subject: [PATCH 04/24] Create makefile.yml

---
 .github/workflows/makefile.yml | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)
 create mode 100644 .github/workflows/makefile.yml

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
new file mode 100644
index 0000000..c2aa974
--- /dev/null
+++ b/.github/workflows/makefile.yml
@@ -0,0 +1,27 @@
+name: Makefile CI
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    
+    - name: configure
+      run: ./configure
+      
+    - name: Install dependencies
+      run: make
+      
+    - name: Run check
+      run: make check
+      
+    - name: Run distcheck
+      run: make distcheck

From 111945bafb3143f10eedc4b13fb97b4559f1b954 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:56:10 +0200
Subject: [PATCH 05/24] Reorganizing folder structure.

---
 .github/workflows/makefile.yml  | 14 +++-----------
 data.geu => datasets/data.geu   |  2 +-
 data.gfd => datasets/data.gfd   |  2 +-
 query.geu => datasets/query.geu |  2 +-
 query.gfd => datasets/query.gfd |  2 +-
 makefile                        |  1 -
 6 files changed, 7 insertions(+), 16 deletions(-)
 rename data.geu => datasets/data.geu (70%)
 rename data.gfd => datasets/data.gfd (69%)
 rename query.geu => datasets/query.geu (65%)
 rename query.gfd => datasets/query.gfd (65%)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index c2aa974..3821048 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -8,20 +8,12 @@ on:
 
 jobs:
   build:
-
     runs-on: ubuntu-latest
-
     steps:
     - uses: actions/checkout@v3
-    
-    - name: configure
-      run: ./configure
       
     - name: Install dependencies
-      run: make
-      
-    - name: Run check
-      run: make check
+      run: make 
       
-    - name: Run distcheck
-      run: make distcheck
+    - name: Build artifacts
+      run: make 
diff --git a/data.geu b/datasets/data.geu
similarity index 70%
rename from data.geu
rename to datasets/data.geu
index 93d9287..d59eb1c 100644
--- a/data.geu
+++ b/datasets/data.geu
@@ -9,4 +9,4 @@ a
 0 2 n
 0 2 f
 0 3 f
-2 3 f
+2 3 f
\ No newline at end of file
diff --git a/data.gfd b/datasets/data.gfd
similarity index 69%
rename from data.gfd
rename to datasets/data.gfd
index a8f3ce1..cfa6425 100644
--- a/data.gfd
+++ b/datasets/data.gfd
@@ -10,4 +10,4 @@ a
 0 2
 0 3
 1 2
-2 3
+2 3
\ No newline at end of file
diff --git a/query.geu b/datasets/query.geu
similarity index 65%
rename from query.geu
rename to datasets/query.geu
index 60d9dd8..fd6e0d3 100644
--- a/query.geu
+++ b/datasets/query.geu
@@ -6,4 +6,4 @@ a
 3
 0 1 f
 0 2 n
-0 2 f
+0 2 f
\ No newline at end of file
diff --git a/query.gfd b/datasets/query.gfd
similarity index 65%
rename from query.gfd
rename to datasets/query.gfd
index 8c76202..0d4d301 100644
--- a/query.gfd
+++ b/datasets/query.gfd
@@ -6,4 +6,4 @@ a
 3
 0 1
 0 2
-0 2
+0 2
\ No newline at end of file
diff --git a/makefile b/makefile
index bcacfca..a5eeed0 100644
--- a/makefile
+++ b/makefile
@@ -6,7 +6,6 @@ SOURCES= ri3.cpp
 OBJECTS=$(SOURCES:.cpp=.o)
 EXECUTABLE=ri36
 
-
 all:	$(SOURCES) $(EXECUTABLE)
 
 $(EXECUTABLE): $(OBJECTS)

From af47263fea20b1ddc28c8f687cc68d02d3ae5d7e Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 08:56:51 +0200
Subject: [PATCH 06/24] Makefile CI.

---
 .github/workflows/makefile.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 3821048..227871f 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -12,8 +12,8 @@ jobs:
     steps:
     - uses: actions/checkout@v3
       
-    - name: Install dependencies
-      run: make 
+    # - name: Install dependencies
+    #  run: make 
       
     - name: Build artifacts
       run: make 

From d3b723d832bba947db27d5623e80f8b11fead3fb Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:05:09 +0200
Subject: [PATCH 07/24] -0fast flag + gitignore.

---
 .gitignore | 2 ++
 makefile   | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)
 create mode 100644 .gitignore

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..d63c5ef
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+ri3.o
+ri36
\ No newline at end of file
diff --git a/makefile b/makefile
index a5eeed0..480b528 100644
--- a/makefile
+++ b/makefile
@@ -1,6 +1,6 @@
 INCLUDES= -I ./rilib/ -I ./include/
 CC=g++
-CFLAGS=-c -O3
+CFLAGS=-c -O3 -Ofast
 
 SOURCES= ri3.cpp
 OBJECTS=$(SOURCES:.cpp=.o)

From fc9c5fe3373fca788ecc42447539ecae1e4ba5e1 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:12:17 +0200
Subject: [PATCH 08/24] Makefile.

---
 .github/workflows/makefile.yml | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 227871f..605f141 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -11,9 +11,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
-      
-    # - name: Install dependencies
-    #  run: make 
-      
-    - name: Build artifacts
-      run: make 
+      - name: Build artifacts
+        run: make
+  upload:
+    needs: build
+    steps:
+    - uses: actions/upload-artifact@v3
+      with:
+        name: ri36
+        path: ri36

From 11dc86750d983c0597df5b6de544ac9738773537 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:13:23 +0200
Subject: [PATCH 09/24] Fix CI.

---
 .github/workflows/makefile.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 605f141..33b817c 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -15,7 +15,6 @@ jobs:
         run: make
   upload:
     needs: build
-    steps:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36

From 6ed85d7c1059cb790d476f76425bb04723313371 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:16:09 +0200
Subject: [PATCH 10/24] Fix CI.

---
 .github/workflows/makefile.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 33b817c..8204985 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -11,11 +11,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
-      - name: Build artifacts
-        run: make
+    - name: Build artifacts
+      run: make
   upload:
     needs: build
+    steps:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36
-        path: ri36
+        path: path/to/artifact/world.txt

From 3f7d94fefb96dfbd77975dcf17b3a5b79fe7215b Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:19:21 +0200
Subject: [PATCH 11/24] Fix.

---
 .github/workflows/makefile.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 8204985..51d3cc9 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -14,6 +14,7 @@ jobs:
     - name: Build artifacts
       run: make
   upload:
+    runs-on: ubuntu-latest
     needs: build
     steps:
     - uses: actions/upload-artifact@v3

From fed3635ce57016191c8dfbbcc54342c921308938 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:20:41 +0200
Subject: [PATCH 12/24] Upload artifact.

---
 .github/workflows/makefile.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 51d3cc9..60a5bb3 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -20,4 +20,4 @@ jobs:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36
-        path: path/to/artifact/world.txt
+        path: ri36

From bd58f5ffe60fc0a19fb2f178c1fbb25b26aeb1a7 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:25:21 +0200
Subject: [PATCH 13/24] Fix.

---
 .github/workflows/makefile.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 60a5bb3..8220ad3 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -20,4 +20,4 @@ jobs:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36
-        path: ri36
+        path: ./ri36

From 585cc5fc83047d4b717842c561e8e679628b4a46 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:27:07 +0200
Subject: [PATCH 14/24] Option to manually trigger the CI.

---
 .github/workflows/makefile.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 8220ad3..b2b064b 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -5,6 +5,8 @@ on:
     branches: [ "master" ]
   pull_request:
     branches: [ "master" ]
+  workflow_dispatch:
+    branches: [ "master" ]
 
 jobs:
   build:

From 967fa2aba6e4b767f80a146eb97f7169316d89c9 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:30:10 +0200
Subject: [PATCH 15/24] CodeQL scanning.

---
 .github/workflows/makefile.yml | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index b2b064b..b0c1f56 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -9,12 +9,37 @@ on:
     branches: [ "master" ]
 
 jobs:
+  
+  analyze:
+    name: Analyze vulnerabilities
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'cpp' ]
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v2
+      with:
+        languages: ${{ matrix.language }}
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v2
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v2
+
   build:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
     - name: Build artifacts
       run: make
+  
   upload:
     runs-on: ubuntu-latest
     needs: build

From d85ad923e3b02882b269ced118449c12f7bb3686 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:33:58 +0200
Subject: [PATCH 16/24] Test.

---
 .github/workflows/makefile.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index b0c1f56..62a0d64 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -35,10 +35,13 @@ jobs:
 
   build:
     runs-on: ubuntu-latest
+    needs: analyze
     steps:
     - uses: actions/checkout@v3
     - name: Build artifacts
       run: make
+    - name: list files
+      run: ls -la
   
   upload:
     runs-on: ubuntu-latest

From e927feff4de98a61e8aa309f72e27a9078dca1d1 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:41:24 +0200
Subject: [PATCH 17/24] Test.

---
 .github/workflows/makefile.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 62a0d64..6d815c3 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -41,7 +41,7 @@ jobs:
     - name: Build artifacts
       run: make
     - name: list files
-      run: ls -la
+      run: pwd
   
   upload:
     runs-on: ubuntu-latest

From bda784cdb902a1a3e47da62db62c986b1aa1e1d7 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 09:43:55 +0200
Subject: [PATCH 18/24] Upload artifact.

---
 .github/workflows/makefile.yml | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 6d815c3..2d5fa95 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -40,8 +40,6 @@ jobs:
     - uses: actions/checkout@v3
     - name: Build artifacts
       run: make
-    - name: list files
-      run: pwd
   
   upload:
     runs-on: ubuntu-latest
@@ -50,4 +48,4 @@ jobs:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36
-        path: ./ri36
+        path: /home/runner/work/RI/RI/ri36

From 696ee1852a6461b1746fb32f90789df10609af58 Mon Sep 17 00:00:00 2001
From: classy-giraffe <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:03:52 +0200
Subject: [PATCH 19/24] Update gitignore.

---
 .gitignore                     |   3 +-
 .vscode/configurationCache.log |   2 +-
 .vscode/targets.log            | 329 +--------------------------------
 3 files changed, 6 insertions(+), 328 deletions(-)

diff --git a/.gitignore b/.gitignore
index d63c5ef..cf1ccf1 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
 ri3.o
-ri36
\ No newline at end of file
+ri36
+.vscode
\ No newline at end of file
diff --git a/.vscode/configurationCache.log b/.vscode/configurationCache.log
index cf7efd3..bab9054 100644
--- a/.vscode/configurationCache.log
+++ b/.vscode/configurationCache.log
@@ -1 +1 @@
-{"buildTargets":["all","ri36"],"launchTargets":["/home/tommaso/Documents/RI>ri36()"],"customConfigurationProvider":{"workspaceBrowse":{"browsePath":["/home/tommaso/Documents/RI","/home/tommaso/Documents/RI/include/","/home/tommaso/Documents/RI/rilib/"],"compilerArgs":["-c","-O3","ri3.cpp","-o","ri3.o"],"compilerPath":"/usr/bin/g++","windowsSdkVersion":""},"fileIndex":[["/home/tommaso/Documents/RI/ri3.cpp",{"uri":{"$mid":1,"fsPath":"/home/tommaso/Documents/RI/ri3.cpp","path":"/home/tommaso/Documents/RI/ri3.cpp","scheme":"file"},"configuration":{"defines":[],"includePath":["/home/tommaso/Documents/RI/rilib/","/home/tommaso/Documents/RI/include/"],"forcedInclude":[],"compilerPath":"/usr/bin/g++","compilerArgs":["-c","-O3","ri3.cpp","-o","ri3.o"],"windowsSdkVersion":""},"compileCommand":{"command":"g++ -c -O3 ri3.cpp -I ./rilib/ -I ./include/ -o ri3.o  ","directory":"/home/tommaso/Documents/RI","file":"/home/tommaso/Documents/RI/ri3.cpp"}}]]}}
\ No newline at end of file
+{"buildTargets":[],"launchTargets":[],"customConfigurationProvider":{"workspaceBrowse":{"browsePath":[],"compilerArgs":[]},"fileIndex":[]}}
\ No newline at end of file
diff --git a/.vscode/targets.log b/.vscode/targets.log
index ce8ae7b..f5b4aaf 100644
--- a/.vscode/targets.log
+++ b/.vscode/targets.log
@@ -1,327 +1,4 @@
-make all --print-data-base --no-builtin-variables --no-builtin-rules --question
-make: *** No rule to make target 'ri3.o', needed by 'ri36'.  Stop.
+make.exe all --print-data-base --no-builtin-variables --no-builtin-rules --question
+"make.exe" non � riconosciuto come comando interno o esterno,
+ un programma eseguibile o un file batch.
 
-# GNU Make 4.3
-# Built for x86_64-pc-linux-gnu
-# Copyright (C) 1988-2020 Free Software Foundation, Inc.
-# License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
-# This is free software: you are free to change and redistribute it.
-# There is NO WARRANTY, to the extent permitted by law.
-
-# Make data base, printed on Mon Jul 11 08:31:59 2022
-
-# Variables
-
-# environment
-GDK_BACKEND = x11
-# environment
-LC_ALL = C
-# environment
-GNOME_SHELL_SESSION_MODE = ubuntu
-# environment
-SSH_AGENT_LAUNCHER = gnome-keyring
-# environment
-GJS_DEBUG_OUTPUT = stderr
-# environment
-VSCODE_IPC_HOOK_EXTHOST = /run/user/1000/vscode-ipc-086cbccc-9936-4f88-a510-7311f25d9299.sock
-# environment
-LC_NAME = it_IT.UTF-8
-# environment
-LC_NUMERIC = it_IT.UTF-8
-# environment
-VSCODE_CWD = /home/tommaso
-# environment
-LC_ADDRESS = it_IT.UTF-8
-# default
-MAKE_COMMAND := make
-# environment
-QT_ACCESSIBILITY = 1
-# automatic
-@D = $(patsubst %/,%,$(dir $@))
-# environment
-VSCODE_HANDLES_UNCAUGHT_ERRORS = true
-# default
-.VARIABLES := 
-# environment
-PWD = /home/tommaso/Documents/RI
-# automatic
-%D = $(patsubst %/,%,$(dir $%))
-# environment
-XDG_DATA_DIRS = /usr/share/ubuntu-wayland:/usr/local/share/:/usr/share/
-# automatic
-^D = $(patsubst %/,%,$(dir $^))
-# environment
-VSCODE_LOG_STACK = false
-# automatic
-%F = $(notdir $%)
-# environment
-VSCODE_CODE_CACHE_PATH = /home/tommaso/.config/Code/CachedData/30d9c6cd9483b2cc586687151bcbcd635f373630
-# environment
-LANG = C
-# environment
-XAUTHORITY = /run/user/1000/.mutter-Xwaylandauth.9KN9O1
-# default
-.LOADED := 
-# default
-.INCLUDE_DIRS = /usr/local/include /usr/include /usr/include
-# makefile
-MAKEFLAGS = pqrR
-# makefile
-CURDIR := /home/tommaso/Documents/RI
-# environment
-VSCODE_PIPE_LOGGING = true
-# environment
-APPLICATION_INSIGHTS_NO_DIAGNOSTIC_CHANNEL = true
-# environment
-LESSOPEN = | /usr/bin/lesspipe %s
-# automatic
-*D = $(patsubst %/,%,$(dir $*))
-# environment
-MFLAGS = -pqrR
-# environment
-SSH_AUTH_SOCK = /run/user/1000/keyring/ssh
-# default
-.SHELLFLAGS := -c
-# environment
-WAYLAND_DISPLAY = wayland-0
-# environment
-XDG_CONFIG_DIRS = /etc/xdg/xdg-ubuntu-wayland:/etc/xdg
-# automatic
-+D = $(patsubst %/,%,$(dir $+))
-# environment
-XDG_SESSION_DESKTOP = ubuntu-wayland
-# makefile (from 'makefile', line 1)
-MAKEFILE_LIST := makefile
-# automatic
-@F = $(notdir $@)
-# environment
-VSCODE_VERBOSE_LOGGING = true
-# environment
-VSCODE_PID = 4216
-# environment
-XDG_SESSION_TYPE = wayland
-# automatic
-?D = $(patsubst %/,%,$(dir $?))
-# makefile (from 'makefile', line 1)
-INCLUDES = -I ./rilib/ -I ./include/
-# environment
-SESSION_MANAGER = local/Ubuntu:@/tmp/.ICE-unix/1511,unix/Ubuntu:/tmp/.ICE-unix/1511
-# automatic
-*F = $(notdir $*)
-# environment
-CHROME_DESKTOP = code-url-handler.desktop
-# environment
-DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/1000/bus
-# automatic
-<D = $(patsubst %/,%,$(dir $<))
-# environment
-VSCODE_NLS_CONFIG = {"locale":"en-us","availableLanguages":{},"_languagePackSupport":true}
-# default
-MAKE_HOST := x86_64-pc-linux-gnu
-# environment
-GNOME_DESKTOP_SESSION_ID = this-is-deprecated
-# makefile
-SHELL = /bin/sh
-# default
-MAKECMDGOALS := all
-# environment
-XMODIFIERS = @im=ibus
-# environment
-GJS_DEBUG_TOPICS = JS ERROR;JS LOG
-# environment
-SHLVL = 0
-# environment
-MAKELEVEL := 0
-# environment
-IM_CONFIG_CHECK_ENV = 1
-# default
-MAKE = $(MAKE_COMMAND)
-# environment
-PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
-# default
-MAKEFILES := 
-# environment
-LC_MONETARY = it_IT.UTF-8
-# automatic
-^F = $(notdir $^)
-# environment
-LC_TIME = it_IT.UTF-8
-# environment
-INVOCATION_ID = 9c8fa17668c949e7aa34355af0e314d7
-# environment
-VSCODE_LOG_NATIVE = false
-# environment
-USERNAME = tommaso
-# environment
-GNOME_SETUP_DISPLAY = :2
-# environment
-LC_TELEPHONE = it_IT.UTF-8
-# environment
-LESSCLOSE = /usr/bin/lesspipe %s %s
-# automatic
-?F = $(notdir $?)
-# environment
-XDG_CURRENT_DESKTOP = Unity
-# environment
-LS_COLORS = 
-# automatic
-+F = $(notdir $+)
-# environment
-DESKTOP_SESSION = ubuntu-wayland
-# environment
-ORIGINAL_XDG_CURRENT_DESKTOP = ubuntu:GNOME
-# makefile (from 'makefile', line 6)
-OBJECTS = $(SOURCES:.cpp=.o)
-# 'override' directive
-GNUMAKEFLAGS := 
-# environment
-LOGNAME = tommaso
-# environment
-GIO_LAUNCHED_DESKTOP_FILE = /usr/share/applications/code.desktop
-# makefile
-.DEFAULT_GOAL := all
-# environment
-SYSTEMD_EXEC_PID = 1531
-# environment
-DISPLAY = :1
-# environment
-USER = tommaso
-# environment
-GTK_MODULES = gail:atk-bridge
-# default
-MAKE_VERSION := 4.3
-# environment
-MANAGERPID = 1376
-# makefile (from 'makefile', line 7)
-EXECUTABLE = ri36
-# environment
-LC_MEASUREMENT = it_IT.UTF-8
-# environment
-GIO_LAUNCHED_DESKTOP_FILE_PID = 4216
-# environment
-_ = /usr/share/code/code
-# environment
-LC_PAPER = it_IT.UTF-8
-# environment
-XDG_RUNTIME_DIR = /run/user/1000
-# makefile (from 'makefile', line 3)
-CFLAGS = -c -O3
-# environment
-JOURNAL_STREAM = 8:18271
-# environment
-XDG_SESSION_CLASS = user
-# environment
-VSCODE_AMD_ENTRYPOINT = vs/workbench/api/node/extensionHostProcess
-# environment
-HOME = /home/tommaso
-# environment
-QT_IM_MODULE = ibus
-# environment
-ELECTRON_RUN_AS_NODE = 1
-# environment
-VSCODE_IPC_HOOK = /run/user/1000/vscode-944e131e-1.68.1-main.sock
-# environment
-IM_CONFIG_PHASE = 1
-# default
-.RECIPEPREFIX := 
-# automatic
-<F = $(notdir $<)
-# default
-SUFFIXES := 
-# environment
-DEBUG = WARN
-# default
-.FEATURES := target-specific order-only second-expansion else-if shortest-stem undefine oneshell nocomment grouped-target extra-prereqs archives jobserver output-sync check-symlink load
-# makefile (from 'makefile', line 2)
-CC = g++
-# makefile (from 'makefile', line 5)
-SOURCES = ri3.cpp
-# environment
-XDG_MENU_PREFIX = gnome-
-# environment
-GDMSESSION = ubuntu-wayland
-# environment
-LC_IDENTIFICATION = it_IT.UTF-8
-# variable set hash-table stats:
-# Load=115/1024=11%, Rehash=0, Collisions=4/150=3%
-
-# Pattern-specific Variable Values
-
-# No pattern-specific variable values.
-
-# Directories
-
-# . (device 66309, inode 29229975): 15 files, no impossibilities.
-
-# 15 files, no impossibilities in 1 directories.
-
-# Implicit Rules
-
-# No implicit rules.
-
-# Files
-
-ri36: ri3.o
-#  Implicit rule search has not been done.
-#  Last modified 2022-07-11 08:30:10.826697731
-#  File has not been updated.
-#  recipe to execute (from 'makefile', line 13):
-	$(CC) $(OBJECTS) -o $@
-
-# Not a target:
-ri3.cpp:
-#  Implicit rule search has been done.
-#  Last modified 2022-07-11 08:30:10.826697731
-#  File has been updated.
-#  Successfully updated.
-
-.cpp.o:
-#  Implicit rule search has not been done.
-#  Modification time never checked.
-#  File has not been updated.
-#  recipe to execute (from 'makefile', line 16):
-	$(CC) $(CFLAGS) $< $(INCLUDES) -o $@  
-
-# Not a target:
-.DEFAULT:
-#  Implicit rule search has not been done.
-#  Modification time never checked.
-#  File has not been updated.
-
-all: ri3.cpp ri36
-#  Command line target.
-#  Implicit rule search has been done.
-#  File does not exist.
-#  File has not been updated.
-
-# Not a target:
-ri3.o:
-#  Implicit rule search has been done.
-#  File does not exist.
-#  File has not been updated.
-
-# Not a target:
-makefile:
-#  Implicit rule search has been done.
- 
-#  Last modified 2022-07-11 08:30:10.826697731
-#  File has been updated.
-#  Successfully updated.
-
-# files hash-table stats:
-# Load=8/1024=1%, Rehash=0, Collisions=0/23=0%
-# VPATH Search Paths
-
-# No 'vpath' search paths.
-
-# No general ('VPATH' variable) search path.
-
-# strcache buffers: 1 (0) / strings = 22 / storage = 178 B / avg = 8 B
-# current buf: size = 8162 B / used = 178 B / count = 22 / avg = 8 B
-
-# strcache performance: lookups = 33 / hit rate = 33%
-# hash-table stats:
-# Load=22/8192=0%, Rehash=0, Collisions=0/33=0%
-# Finished Make data base on Mon Jul 11 08:31:59 2022
-
- 

From 8ab7016237a0ea3f1599dc9b99c8e1ff60fc89a3 Mon Sep 17 00:00:00 2001
From: classy-giraffe <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:09:00 +0200
Subject: [PATCH 20/24] CI.

---
 .github/workflows/makefile.yml | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 2d5fa95..76a2d1e 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -33,18 +33,13 @@ jobs:
     - name: Perform CodeQL Analysis
       uses: github/codeql-action/analyze@v2
 
-  build:
+  build-and-upload:
     runs-on: ubuntu-latest
     needs: analyze
     steps:
     - uses: actions/checkout@v3
     - name: Build artifacts
       run: make
-  
-  upload:
-    runs-on: ubuntu-latest
-    needs: build
-    steps:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36

From 72e3592ce70db03f54280a0d92aa56d4f3b58aeb Mon Sep 17 00:00:00 2001
From: classy-giraffe <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:09:34 +0200
Subject: [PATCH 21/24] Path.

---
 .github/workflows/makefile.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/makefile.yml
index 76a2d1e..301b400 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/makefile.yml
@@ -43,4 +43,4 @@ jobs:
     - uses: actions/upload-artifact@v3
       with:
         name: ri36
-        path: /home/runner/work/RI/RI/ri36
+        path: ri36

From 23acb468667c7d7614f85863d24fcb44570d0050 Mon Sep 17 00:00:00 2001
From: classy-giraffe <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:26:26 +0200
Subject: [PATCH 22/24] Better readme.

---
 .github/workflows/{makefile.yml => CI.yml} | 2 +-
 README.md                                  | 5 +++++
 2 files changed, 6 insertions(+), 1 deletion(-)
 rename .github/workflows/{makefile.yml => CI.yml} (98%)

diff --git a/.github/workflows/makefile.yml b/.github/workflows/CI.yml
similarity index 98%
rename from .github/workflows/makefile.yml
rename to .github/workflows/CI.yml
index 301b400..112d290 100644
--- a/.github/workflows/makefile.yml
+++ b/.github/workflows/CI.yml
@@ -1,4 +1,4 @@
-name: Makefile CI
+name: CI
 
 on:
   push:
diff --git a/README.md b/README.md
index 2691097..ead82db 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,8 @@
+![](https://img.shields.io/badge/C++-RI-blue.svg?style=flat&logo=c%2B%2B)
+![](https://img.shields.io/github/stars/InfOmics/RI)
+![](https://img.shields.io/github/forks/InfOmics/RI)
+![](https://img.shields.io/github/workflow/status/classy-giraffe/RI/CI)
+
 # RI
 ***Version: 3.6***
 > RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints. 

From 0104b6182847b49ad1b5c2ebcfeebd3c30ddd962 Mon Sep 17 00:00:00 2001
From: classy-giraffe <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:37:37 +0200
Subject: [PATCH 23/24] Better readme.

---
 README.md | 68 ++++++++++++++++---------------------------------------
 1 file changed, 19 insertions(+), 49 deletions(-)

diff --git a/README.md b/README.md
index ead82db..0d93168 100644
--- a/README.md
+++ b/README.md
@@ -10,10 +10,9 @@
 <hr />
 
 ### Description
-***RI*** is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints. It is both a C++ library and a standalone tool, providing developing API and a command line interface, with no dependencies out of standard GNU C++ library. RI works on Unix and Mac OS X systems with G++ installed, and it can be compiled under Windows using Gygwin. Working graphs may be directed, undirected, multigraphs with optional attributes both on nodes and edges. Customizable features allow user-defined behaviors for attribute comparisons and the algorithm's flow.
+***RI*** is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints. It is both a C++ library and a standalone tool, providing developing API and a command line interface, with no dependencies out of standard GNU C++ library. ***RI*** works on Unix and Mac OS X systems with G++ installed, and it can be compiled under Windows using Gygwin. Working graphs may be directed, undirected, multigraphs with optional attributes both on nodes and edges. Customizable features allow user-defined behaviors for attribute comparisons and the algorithm's flow.
 
-
-***RI*** aims to provide a better search strategy for the common used backtracking approach to the subgraph isomorphism problem. It can be integrated with additional preprocessing steps or it can be used for the verification of candidate structures coming from data mining, data indexing or other filtering techniques. RI is able to find graphs isomorphisms, subgraph isomorphisms and induced subgraph isomorphisms. It is distributed in several versions divide chiefly in two groups respectively for static or dynamically changing attributes. All proposed versions are developed taking into account trade-offs between time and memory requirements. Optional behaviors such as stop at first encountered match, processing of result matches, type of isomorphism and additional features may be enabled thanks to high modularity and library's API.
+***RI*** aims to provide a better search strategy for the common used backtracking approach to the subgraph isomorphism problem. It can be integrated with additional preprocessing steps or it can be used for the verification of candidate structures coming from data mining, data indexing or other filtering techniques. ***RI*** is able to find graphs isomorphisms, subgraph isomorphisms and induced subgraph isomorphisms. It is distributed in several versions divide chiefly in two groups respectively for static or dynamically changing attributes. All proposed versions are developed taking into account trade-offs between time and memory requirements. Optional behaviors such as stop at first encountered match, processing of result matches, type of isomorphism and additional features may be enabled thanks to high modularity and library's API.
 
 The ***RI*** project also aims to provide a comparison of existing exact subgraph matching algorithms on synthetic and real life graphs. An initial collection of datasets is proposed, it includes synthetic and biological graphs but further types of data regarding other research areas (i.e. engineering, computer vision, etc...) are coming. A list of proposed applications is also given.
 
@@ -23,10 +22,15 @@ Please send us an email to get software sources or datasets (see Contacts).
 
 ### Usage
 ##### RI - CLI (Command Line Interface)
-Before using the RI command line interface of all distributions, please rebuilt it by make -B
-All versions of RI take in input the same parameters:
+In order to use RI you must grab an artifact produced by the CI (check the actions tab on GitHub) or manually compile it from scratch.
+On Debian-based distributions (Debian, Ubuntu, PopOS etc...):
+1. Clone the repository
+2. Install the dependencies (G++ and make)
+```sudo apt install g++ make```
+3. Compile it (you might need to switch to the repository directory by using `cd`)
+```make```
 ```
- ./ri ISO_TYPE INPUT_FORMAT target_graph pattern_graph    
+ ./ri <ISO_TYPE> <INPUT_FORMAT> <target_graph> <pattern_graph>    
 ```
 |ISO_TYPE|specify isomorphism|
 |---------|-------------------|
@@ -42,40 +46,6 @@ All versions of RI take in input the same parameters:
 |geu	|undirected graphs with attributes both on nodes and edges.|
 |vfu	|Sansone et al. file format for labeled directed graphs with attributes only on nodes.|
 
-<!--
-##### Query extractor
-
-Before using the query extractor tool please rebuilt it by digiting `make -B querygen`, then the usage of the built executable is the following:
-```
-./querygen [gfu gfd] input_graph number_of_nodes number_of_edges output_file number_of_queries
-```
-The query extractor tries to extract a total amount of number_of_queries subgraphs, from the given input_graph, with the specified number_of_nodes and number_of_edges, saving them at the specified output prefix output_file.
-
-You can set the number_of_nodes or number_of_edges to -1 to do not specify them. For example, let the number_of_edges fixed to a value and the number_of_nodes set to the -1, than the extractor tries to extract a subgraph just with the given number of edges not caring the number of nodes. You can also set number_of_nodes to a decimal value between 0 and 1 to specify it as a percentage of the number_of_edges.
-
-Note that if the input parameters do not reflect the properties of the input_graph you can obtain an unwanted resulting subgraph. So, the extractor tries first to generate a graph with the specified number of edges and the maximum possible number of nodes near to the input value. This does not exclude that a subgraph with the specified number of edges will be extracted.
-
-
-##### FocusSearch-C++
-Before use the FocusSearch-C++ command line interface of all distributions, please rebuilt it by make -B
-The tool usage is:
-
-```
-./fsearch ISO_TYPE INPUT_FORMAT target_graph pattern_graph
-```
-
-|ISO_TYPE|specify isomorphism|
-|---------------|------------|
-|mono|monomorphism, the classical subgraph matching|
-
-|INPUT_FORMAT|	specify input file format|
-|---------------|------------|
-|gfd	|directed graphs with attributes only on nodes.|
-|gfu	|undirected graphs with attributes only on nodes.|
-|vfu| Sansone et al. file format for labeled directed graphs with attributes only on nodes.|
-
--->
-
 ##### Default graph file format
 
 The RI project provides two graph file format gfu and gfd, respectively for undirected and directed graphs with attributes only on nodes.
@@ -140,19 +110,19 @@ RI is distributed under the MIT license. This means that it is free for both aca
 You are free to link or use RI inside source code of your own program. If do so, please reference (cite) RI and this website. We appreciate bug fixes and would be happy to collaborate for improvements. 
 [License](https://raw.githubusercontent.com/GiugnoLab/RI/master/LICENSE)
 
-<hr />
 
 ### Citation
-     Bonnici, V., Giugno, R., Pulvirenti, A., Shasha, D., & Ferro, A. (2013).
-     A subgraph isomorphism algorithm and its application to biochemical data. 
-     BMC bioinformatics, 14(7), S13.
+```
+Bonnici, V., Giugno, R., Pulvirenti, A., Shasha, D., & Ferro, A. (2013).
+A subgraph isomorphism algorithm and its application to biochemical data. 
+BMC bioinformatics, 14(7), S13.
 
-     Bonnici V, Giugno R. 
-     On the variable ordering in subgraph isomorphism algorithms. 
-     IEEE/ACM transactions on computational biology and bioinformatics. 2016 Jan 7;14(1):193-203.
-<hr />
+Bonnici V, Giugno R. 
+On the variable ordering in subgraph isomorphism algorithms. 
+IEEE/ACM transactions on computational biology and bioinformatics. 2016 Jan 7;14(1):193-203.
+```
 
 ### References
- if you have used any of the RI project software, please cite the following paper:
+If you have used any of the RI project software, please cite the following paper:
  
 Vincenzo Bonnici, Rosalba Giugno, Alfredo Pulvirenti, Dennis Shasha and Alfredo Ferro. A subgraph isomorphism algorithm and its application to biochemical data. BMC Bioinformatics 2013, 14(Suppl 7):S13 doi:10.1186/1471-2105-14-S7-S13.

From a008ff75d54e71e04ec0194191f874991557a654 Mon Sep 17 00:00:00 2001
From: Tommaso Chiti <chitilivorno@gmail.com>
Date: Mon, 11 Jul 2022 12:39:31 +0200
Subject: [PATCH 24/24] Delete .vscode directory

---
 .vscode/configurationCache.log | 1 -
 .vscode/settings.json          | 3 ---
 .vscode/targets.log            | 4 ----
 3 files changed, 8 deletions(-)
 delete mode 100644 .vscode/configurationCache.log
 delete mode 100644 .vscode/settings.json
 delete mode 100644 .vscode/targets.log

diff --git a/.vscode/configurationCache.log b/.vscode/configurationCache.log
deleted file mode 100644
index bab9054..0000000
--- a/.vscode/configurationCache.log
+++ /dev/null
@@ -1 +0,0 @@
-{"buildTargets":[],"launchTargets":[],"customConfigurationProvider":{"workspaceBrowse":{"browsePath":[],"compilerArgs":[]},"fileIndex":[]}}
\ No newline at end of file
diff --git a/.vscode/settings.json b/.vscode/settings.json
deleted file mode 100644
index 65e1ec0..0000000
--- a/.vscode/settings.json
+++ /dev/null
@@ -1,3 +0,0 @@
-{
-    "makefile.extensionOutputFolder": "./.vscode"
-}
\ No newline at end of file
diff --git a/.vscode/targets.log b/.vscode/targets.log
deleted file mode 100644
index f5b4aaf..0000000
--- a/.vscode/targets.log
+++ /dev/null
@@ -1,4 +0,0 @@
-make.exe all --print-data-base --no-builtin-variables --no-builtin-rules --question
-"make.exe" non � riconosciuto come comando interno o esterno,
- un programma eseguibile o un file batch.
-