experiment config infile

[colindaven]

Hi again,

so the reason I didn't use the prepare commands for testing is I didn't know what the config file format is. Maybe I missed this somewhere in the paper or the docs, could you point this out please ?

java -Xmx50g -jar ~/NAS01/programs/AlignerBoost/AlignerBoost.jar prepare readQC
Usage: java -jar AlignerBoost.jar prepare readQC

Thanks
Colin

[e00011027]

Hi Colin,

I've updated the main README of AlignerBoost on GitHub. Just look for "Best
Practice" and you will find the link to the directory of the example README
and configure file. The config file is just a tab-delimited plain-text
file, so just fill it with Excel/others and save it as a tsv file and you
can start.

Best
Qi

On Fri, Oct 14, 2016 at 7:57 AM, colindaven notifications@github.com
wrote:

Hi again,

so the reason I didn't use the prepare commands for testing is I didn't
know what the config file format is. Maybe I missed this somewhere in the
paper or the docs, could you point this out please ?

java -Xmx50g -jar ~/NAS01/programs/AlignerBoost/AlignerBoost.jar prepare
readQC
Usage: java -jar AlignerBoost.jar prepare readQC

Thanks
Colin

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Qi Zheng, Ph.D.
Bioinformatician of Dermatology, Perelman School of Medicine,University of
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