diff --git a/src/per_file.bzl b/src/per_file.bzl
index c6b0c59e..a12a0997 100644
--- a/src/per_file.bzl
+++ b/src/per_file.bzl
@@ -99,10 +99,15 @@ def _run_code_checker(
     analyzer_executables = "clangsa:" + info.clangsa.path + \
                            ";clang-tidy:" + info.clang_tidy.path
 
+    # Convert the list of "NAME=value" strings into a dict.
+    # Entries without "=" are ignored.
+    env = {}
+    for entry in env_vars:
+        name, sep, value = entry.partition("=")
+        if sep:
+            env[name] = value
+
     # Action to run CodeChecker for a file
-    # env_vars are unused for now, since
-    # use_default_shell_env and env are incompatible
-    # TODO: use env for environment variables, instead of passing it as argument
     ctx.actions.run(
         inputs = inputs,
         outputs = outputs,
@@ -135,6 +140,7 @@ def _run_code_checker(
             analyzer_executables,
         ],
         mnemonic = "CodeChecker",
+        env = env,
         progress_message = "CodeChecker analyze {}".format(src.short_path),
     )
     return outputs
diff --git a/src/per_file_script.py b/src/per_file_script.py
index c2280c23..9a79e46c 100644
--- a/src/per_file_script.py
+++ b/src/per_file_script.py
@@ -187,7 +187,10 @@ def _run_codechecker(cfg: Config) -> None:
         + ["--config", cfg.config_file]
         + [absolute_path]
     )
-    log(cfg, f"CodeChecker command: {' '.join(codechecker_cmd)}\n")
+
+    cc_env = _get_codechecker_env(cfg)
+    env_prefix = " ".join(f"{key}={cc_env[key]}" for key in sorted(cc_env))
+    log(cfg, f"CodeChecker command: {env_prefix} {' '.join(codechecker_cmd)}\n")
     log(cfg, "===---------------------------------------------===\n")
     log(cfg, "               CodeChecker error log               \n")
     log(cfg, "===---------------------------------------------===\n")
diff --git a/test/unit/config/BUILD b/test/unit/config/BUILD
index 224b07e2..e49ff138 100644
--- a/test/unit/config/BUILD
+++ b/test/unit/config/BUILD
@@ -98,6 +98,29 @@ unit_test(
     files = "test/unit/config/codechecker_env/codechecker.log",
 )
 
+codechecker_test(
+    name = "per_file_env",
+    config = "config_env",
+    per_file = True,
+    tags = ["manual"],
+    targets = [
+        "test_zero",
+    ],
+)
+
+unit_test(
+    name = "per_file_env_test",
+    contains = [
+        "CC_TEST_VAR=42",
+        "CC_TEST_PATH=/tmp/first:/tmp/second",
+        "CC_TEST_FLAGS=-DFIRST=1 -DSECOND=2",
+        "CC_TEST_PAIRS=VAR1=1; VAR2=2",
+        "CC_TEST_LIST=1; 2; 3;",
+    ],
+    data = [":per_file_env"],
+    files = "test/unit/config/per_file_env/data/test-unit-config-zero_div.cc_codechecker.log",
+)
+
 # None of these codechecker rules should find any issues
 codechecker(
     name = "codechecker_json",